| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900979
Identifier: 159900979
GI number: 159900979
Start: 5711556
End: 5712794
Strand: Reverse
Name: 159900979
Synonym: Haur_4466
Alternate gene names: NA
Gene position: 5712794-5711556 (Counterclockwise)
Preceding gene: 159900985
Following gene: 159900975
Centisome position: 90.01
GC content: 50.85
Gene sequence:
>1239_bases ATGCAATGGAGCATGCGGCTACGTTCGCTCTGCATTCCTGCTCTATTGACGTTCATGATCGCTGGTTTTGCCGCGTTTAT GTTCAGTCAACCGCACGCTAGCTTCGCTCAAGATAGCGAAGGTTCACCACCTGATTGCCCTGGCTTGGGTGATCTCGGTG CTTGGTTCACCGCTGAAAACGAAGTTGTTATCATCAATCGTTCGAGCGTTTGTACCTACGAGGTTGGCACGGCTGTCTAT AAAAAATTCGATGCCGTGACCGATCATCAGGTGCTTTTCGCCTCGCAAACTGATCAACTGCCCCCCAATACCCAACGCAC CTATCGCCAAACCTTAAACCCTTGTGCCGGCCAAATGAGCGCCTTCTTCGGGCCGGTGCTGCCAAGTTTAATGAACCAAC GCTACAACGAGCGCCTGTTGGCAGCCAATCATTTTGGTGGCACGAATTATTGTTTGCGCAGTTGTGACTCGGGTCAATTG CTAGGTTGGGTCGGGGTCAGCTCGAATGCAATTTTGCAAAGCTCAGCTCGCATCGGCATGAAAATCACAGGTGCACCGCC ATGGCAAGTTGAGTTTCGCCTGACTGGCCCGATGACCATGACTCACATCGAGCAAATTGATCCCTATTTGTTCACAGGCA ATACCTGGAATTTAAGCGACGTACCAATTGGCGATTACACCATGAAAGCCACCTATATTGCCAACCCAGGCGTGCGCTGC GATAGCAAAACGATTCAATTTAAAGTTGCTAGCACCCCGCTGCCAACTCCCACGCCATCGCCAACCCCCACCCCAGTGCC AGTCTATCGGGCGCGAATCGTGCTCAATTCATTGGTTATTTGGGATGCGAATCGTGGTGATGGGCTAACCAATTTCGATG GATTTGTCCGGCCAGGCGATACAATTTCCTACACCCTTGCCATTCAAAATACTGGCAACATGCCCCTGACCAATGTGCAA ATCGTCGATCCCTTCTCGAATGCGACCAGTTTTGCGGGATTAAGCCTACCAGCACCCCAAATTCAGCCAAGCCCCGATGG TTCCGGCCCGATTGGCTGGCAAATTCCCGTCTTGCAGCCCAACCAGCGCATCGATGCCACCTTCCATGTGATCGTCAAAG AATCGATTCGCGGCACCTATACCCAAATTATCAATAATGCTAGCTTTGCCAGCAACGAAACTGGCCAACAGTGGAGCAAT ACCACTGAGCATATTTACAATCCAGATTTTGATCAATAA
Upstream 100 bases:
>100_bases GCAGATTGATTGAATAGCTAGCTAGTCATTGACATGACTTAAGGCCTGAGTCATAATAGTCCTACCGACATACCAACCAA TCATCGCAGGATGGTGTTTT
Downstream 100 bases:
>100_bases TTTGGGGATCGGTTGTTGGGGATCGGGGGTCAACTACCCAGCGACCGGGCAAAACATCAGATCCACAGCTCGCTAATTTC ATCGGAAACCGCCTGATTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 412; Mature: 412
Protein sequence:
>412_residues MQWSMRLRSLCIPALLTFMIAGFAAFMFSQPHASFAQDSEGSPPDCPGLGDLGAWFTAENEVVIINRSSVCTYEVGTAVY KKFDAVTDHQVLFASQTDQLPPNTQRTYRQTLNPCAGQMSAFFGPVLPSLMNQRYNERLLAANHFGGTNYCLRSCDSGQL LGWVGVSSNAILQSSARIGMKITGAPPWQVEFRLTGPMTMTHIEQIDPYLFTGNTWNLSDVPIGDYTMKATYIANPGVRC DSKTIQFKVASTPLPTPTPSPTPTPVPVYRARIVLNSLVIWDANRGDGLTNFDGFVRPGDTISYTLAIQNTGNMPLTNVQ IVDPFSNATSFAGLSLPAPQIQPSPDGSGPIGWQIPVLQPNQRIDATFHVIVKESIRGTYTQIINNASFASNETGQQWSN TTEHIYNPDFDQ
Sequences:
>Translated_412_residues MQWSMRLRSLCIPALLTFMIAGFAAFMFSQPHASFAQDSEGSPPDCPGLGDLGAWFTAENEVVIINRSSVCTYEVGTAVY KKFDAVTDHQVLFASQTDQLPPNTQRTYRQTLNPCAGQMSAFFGPVLPSLMNQRYNERLLAANHFGGTNYCLRSCDSGQL LGWVGVSSNAILQSSARIGMKITGAPPWQVEFRLTGPMTMTHIEQIDPYLFTGNTWNLSDVPIGDYTMKATYIANPGVRC DSKTIQFKVASTPLPTPTPSPTPTPVPVYRARIVLNSLVIWDANRGDGLTNFDGFVRPGDTISYTLAIQNTGNMPLTNVQ IVDPFSNATSFAGLSLPAPQIQPSPDGSGPIGWQIPVLQPNQRIDATFHVIVKESIRGTYTQIINNASFASNETGQQWSN TTEHIYNPDFDQ >Mature_412_residues MQWSMRLRSLCIPALLTFMIAGFAAFMFSQPHASFAQDSEGSPPDCPGLGDLGAWFTAENEVVIINRSSVCTYEVGTAVY KKFDAVTDHQVLFASQTDQLPPNTQRTYRQTLNPCAGQMSAFFGPVLPSLMNQRYNERLLAANHFGGTNYCLRSCDSGQL LGWVGVSSNAILQSSARIGMKITGAPPWQVEFRLTGPMTMTHIEQIDPYLFTGNTWNLSDVPIGDYTMKATYIANPGVRC DSKTIQFKVASTPLPTPTPSPTPTPVPVYRARIVLNSLVIWDANRGDGLTNFDGFVRPGDTISYTLAIQNTGNMPLTNVQ IVDPFSNATSFAGLSLPAPQIQPSPDGSGPIGWQIPVLQPNQRIDATFHVIVKESIRGTYTQIINNASFASNETGQQWSN TTEHIYNPDFDQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45146; Mature: 45146
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQWSMRLRSLCIPALLTFMIAGFAAFMFSQPHASFAQDSEGSPPDCPGLGDLGAWFTAEN CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC EVVIINRSSVCTYEVGTAVYKKFDAVTDHQVLFASQTDQLPPNTQRTYRQTLNPCAGQMS CEEEEECCCEEEEEHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCHHHHHHH AFFGPVLPSLMNQRYNERLLAANHFGGTNYCLRSCDSGQLLGWVGVSSNAILQSSARIGM HHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHCCCCCCEEEEEECCCCCEEECCCCCCE KITGAPPWQVEFRLTGPMTMTHIEQIDPYLFTGNTWNLSDVPIGDYTMKATYIANPGVRC EEECCCCEEEEEEEECCEEEHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCC DSKTIQFKVASTPLPTPTPSPTPTPVPVYRARIVLNSLVIWDANRGDGLTNFDGFVRPGD CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCC TISYTLAIQNTGNMPLTNVQIVDPFSNATSFAGLSLPAPQIQPSPDGSGPIGWQIPVLQP CEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC NQRIDATFHVIVKESIRGTYTQIINNASFASNETGQQWSNTTEHIYNPDFDQ CCCCCCEEEEEEHHHHCHHHHHHHCCCCCCCCCCCCHHCCCHHHCCCCCCCC >Mature Secondary Structure MQWSMRLRSLCIPALLTFMIAGFAAFMFSQPHASFAQDSEGSPPDCPGLGDLGAWFTAEN CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC EVVIINRSSVCTYEVGTAVYKKFDAVTDHQVLFASQTDQLPPNTQRTYRQTLNPCAGQMS CEEEEECCCEEEEEHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCHHHHHHH AFFGPVLPSLMNQRYNERLLAANHFGGTNYCLRSCDSGQLLGWVGVSSNAILQSSARIGM HHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHCCCCCCEEEEEECCCCCEEECCCCCCE KITGAPPWQVEFRLTGPMTMTHIEQIDPYLFTGNTWNLSDVPIGDYTMKATYIANPGVRC EEECCCCEEEEEEEECCEEEHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCC DSKTIQFKVASTPLPTPTPSPTPTPVPVYRARIVLNSLVIWDANRGDGLTNFDGFVRPGD CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCC TISYTLAIQNTGNMPLTNVQIVDPFSNATSFAGLSLPAPQIQPSPDGSGPIGWQIPVLQP CEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC NQRIDATFHVIVKESIRGTYTQIINNASFASNETGQQWSNTTEHIYNPDFDQ CCCCCCEEEEEEHHHHCHHHHHHHCCCCCCCCCCCCHHCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA