BacMap

Definition	Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession	NC_009972
Length	6,346,587

Click here to switch to the map view.

The map label for this gene is bcd [H]

Identifier: 159900904

GI number: 159900904

Start: 5609853

End: 5611013

Strand: Reverse

Name: bcd [H]

Synonym: Haur_4391

Alternate gene names: 159900904

Gene position: 5611013-5609853 (Counterclockwise)

Preceding gene: 159900906

Following gene: 159900901

Centisome position: 88.41

GC content: 50.13

Gene sequence:

>1161_bases
ATGGAACTCAACGAAGAGCTACGCATGTTGCGTGAAACCGTGCGCGATTTTGCCGTCAAAGAAATTAAGCCAATTGCCCG
CGAAGTTGATGAAGCAGAACGCGTACCATTCGAGACAATTCGCAAGGCTGGTAATTTGGGCTTGCTCGGCATTCCCTTCC
CCGAGGAATACGGCGGCGCTGATGCAGGGATCGTCGGCTATTGTATTTTGCAAGAGGAAATCAACCGTTATTGTGCCTCA
ACTGGCACGATTATTGGCGCACATGCCCAGCTTTGTGGCATGTCGATTTTTCTATCGGGCAATGATGAGCAAAAATCACG
CTATCTTAGCAAACTCAACGAAGGCAAATTATTGGGTGCTTGGGCACTCACCGAGCCAAATGCCGGCTCCGATGCGGCCA
GCATTACCACCACCGCAACCCAAGATGGCGACGATTGGATCATCAACGGCGGCAAGATGTGGATCACCAATGGCTCGTTT
GCCGATGTGATTGTGGTGTTTGCCTCGACCAATCGCGAGCGCGGCGCACGCGGCGGCATCAGCGCATTTATCGTCGAAAA
AGATTTCGCGGGCTTCAAAGTTGGCAAAGTCGAGGAAAAAATGGGCTTGCGAGCCTCGCATACCGCCTCGATCTTTTTTG
AAAATTGCCGTGTGCCCGCTAAAAATGTATTGGGCGAAATTGGAGCAGGCTTTGGCGTTGCCATGAAAACCCTCGATATT
GGGCGCTGTGGTTTGGGCGCAAGTGCGCTTGGCTCAGCCAAAGAAGCCTACGATTTGGCCTTGCACTACAGCGTTGAACG
CCAACAATTTGGCCGCCCAATCGCCGATTTCCAAGCAATTCAGATCAAATTGGCCGAAATGCGCACTAAAATCTATGCTA
TGGAGCAAATGGTTTATCACTGCGCAGCCTTGGTTGATGCCAAAAAGCCAGCCACGCTTGAATCATCGATGGTCAAGTTG
TTCTGCACCGAGGCTGCTTCGCAAATTATCGACGAAGCGATTCAAATTTATGGTGGAATGGGCTTTAGCCGCGAAGTACC
ACTCGAACGGATGTATCGCGATGCTCGGGTCACGCGGATTTTTGAAGGCACAAACGAAATTCAAAAATATGTGATTGCTG
GCGAAGAACTCAAAAAACTGGGCCATAAAATCAAAATGTAG

Upstream 100 bases:

>100_bases
TCTTGCTTAAATGATACACCCTAATTTAAGCACTGAAAACTTTCATCAAAACCTGCTATTTTGCCTTCTGCCTTTTGCCC
TTATTTAGGAGGTTTTCCCG

Downstream 100 bases:

>100_bases
TGTCATTGATTGACGCGAGTTTCAGCATAATGGCATTATGAGCACTGCTCATGATGCCATTGTTCATTTAAACAAGCGCG
GGCGATTGTGCGTCAAAGTT

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MELNEELRMLRETVRDFAVKEIKPIAREVDEAERVPFETIRKAGNLGLLGIPFPEEYGGADAGIVGYCILQEEINRYCAS
TGTIIGAHAQLCGMSIFLSGNDEQKSRYLSKLNEGKLLGAWALTEPNAGSDAASITTTATQDGDDWIINGGKMWITNGSF
ADVIVVFASTNRERGARGGISAFIVEKDFAGFKVGKVEEKMGLRASHTASIFFENCRVPAKNVLGEIGAGFGVAMKTLDI
GRCGLGASALGSAKEAYDLALHYSVERQQFGRPIADFQAIQIKLAEMRTKIYAMEQMVYHCAALVDAKKPATLESSMVKL
FCTEAASQIIDEAIQIYGGMGFSREVPLERMYRDARVTRIFEGTNEIQKYVIAGEELKKLGHKIKM

Sequences:

>Translated_386_residues
MELNEELRMLRETVRDFAVKEIKPIAREVDEAERVPFETIRKAGNLGLLGIPFPEEYGGADAGIVGYCILQEEINRYCAS
TGTIIGAHAQLCGMSIFLSGNDEQKSRYLSKLNEGKLLGAWALTEPNAGSDAASITTTATQDGDDWIINGGKMWITNGSF
ADVIVVFASTNRERGARGGISAFIVEKDFAGFKVGKVEEKMGLRASHTASIFFENCRVPAKNVLGEIGAGFGVAMKTLDI
GRCGLGASALGSAKEAYDLALHYSVERQQFGRPIADFQAIQIKLAEMRTKIYAMEQMVYHCAALVDAKKPATLESSMVKL
FCTEAASQIIDEAIQIYGGMGFSREVPLERMYRDARVTRIFEGTNEIQKYVIAGEELKKLGHKIKM
>Mature_386_residues
MELNEELRMLRETVRDFAVKEIKPIAREVDEAERVPFETIRKAGNLGLLGIPFPEEYGGADAGIVGYCILQEEINRYCAS
TGTIIGAHAQLCGMSIFLSGNDEQKSRYLSKLNEGKLLGAWALTEPNAGSDAASITTTATQDGDDWIINGGKMWITNGSF
ADVIVVFASTNRERGARGGISAFIVEKDFAGFKVGKVEEKMGLRASHTASIFFENCRVPAKNVLGEIGAGFGVAMKTLDI
GRCGLGASALGSAKEAYDLALHYSVERQQFGRPIADFQAIQIKLAEMRTKIYAMEQMVYHCAALVDAKKPATLESSMVKL
FCTEAASQIIDEAIQIYGGMGFSREVPLERMYRDARVTRIFEGTNEIQKYVIAGEELKKLGHKIKM

Specific function: Catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA. [C]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=378, Percent_Identity=46.8253968253968, Blast_Score=343, Evalue=1e-94,
Organism=Homo sapiens, GI21361497, Length=387, Percent_Identity=41.6020671834625, Blast_Score=290, Evalue=2e-78,
Organism=Homo sapiens, GI4557231, Length=382, Percent_Identity=40.3141361256544, Blast_Score=274, Evalue=1e-73,
Organism=Homo sapiens, GI187960098, Length=382, Percent_Identity=40.3141361256544, Blast_Score=274, Evalue=1e-73,
Organism=Homo sapiens, GI226958412, Length=375, Percent_Identity=39.2, Blast_Score=274, Evalue=1e-73,
Organism=Homo sapiens, GI76496475, Length=401, Percent_Identity=40.6483790523691, Blast_Score=263, Evalue=2e-70,
Organism=Homo sapiens, GI4557235, Length=401, Percent_Identity=40.6483790523691, Blast_Score=263, Evalue=3e-70,
Organism=Homo sapiens, GI226958414, Length=336, Percent_Identity=39.8809523809524, Blast_Score=254, Evalue=7e-68,
Organism=Homo sapiens, GI4501859, Length=371, Percent_Identity=35.8490566037736, Blast_Score=254, Evalue=7e-68,
Organism=Homo sapiens, GI4501857, Length=374, Percent_Identity=37.1657754010695, Blast_Score=244, Evalue=8e-65,
Organism=Homo sapiens, GI7656849, Length=382, Percent_Identity=35.0785340314136, Blast_Score=233, Evalue=3e-61,
Organism=Homo sapiens, GI4503943, Length=369, Percent_Identity=32.2493224932249, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI7669494, Length=359, Percent_Identity=32.3119777158774, Blast_Score=168, Evalue=8e-42,
Organism=Homo sapiens, GI211971008, Length=412, Percent_Identity=28.6407766990291, Blast_Score=128, Evalue=7e-30,
Organism=Homo sapiens, GI48976061, Length=412, Percent_Identity=28.6407766990291, Blast_Score=128, Evalue=8e-30,
Organism=Homo sapiens, GI38505218, Length=390, Percent_Identity=27.6923076923077, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI156104866, Length=247, Percent_Identity=26.7206477732794, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI156104864, Length=247, Percent_Identity=26.7206477732794, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI218563752, Length=240, Percent_Identity=27.0833333333333, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI1786223, Length=379, Percent_Identity=30.6068601583113, Blast_Score=171, Evalue=9e-44,
Organism=Escherichia coli, GI87081958, Length=382, Percent_Identity=31.413612565445, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI87082384, Length=283, Percent_Identity=25.7950530035336, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081702, Length=304, Percent_Identity=26.9736842105263, Blast_Score=79, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17570075, Length=385, Percent_Identity=39.2207792207792, Blast_Score=277, Evalue=8e-75,
Organism=Caenorhabditis elegans, GI17508101, Length=372, Percent_Identity=37.9032258064516, Blast_Score=273, Evalue=1e-73,
Organism=Caenorhabditis elegans, GI71985184, Length=378, Percent_Identity=38.3597883597884, Blast_Score=259, Evalue=2e-69,
Organism=Caenorhabditis elegans, GI17569725, Length=376, Percent_Identity=37.7659574468085, Blast_Score=256, Evalue=1e-68,
Organism=Caenorhabditis elegans, GI17506239, Length=371, Percent_Identity=37.1967654986523, Blast_Score=256, Evalue=1e-68,
Organism=Caenorhabditis elegans, GI17538396, Length=381, Percent_Identity=37.5328083989501, Blast_Score=253, Evalue=1e-67,
Organism=Caenorhabditis elegans, GI17534899, Length=374, Percent_Identity=36.6310160427808, Blast_Score=245, Evalue=3e-65,
Organism=Caenorhabditis elegans, GI17533517, Length=379, Percent_Identity=34.8284960422164, Blast_Score=234, Evalue=5e-62,
Organism=Caenorhabditis elegans, GI71990804, Length=301, Percent_Identity=38.8704318936877, Blast_Score=216, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI71985192, Length=310, Percent_Identity=36.7741935483871, Blast_Score=203, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17534353, Length=373, Percent_Identity=31.3672922252011, Blast_Score=191, Evalue=7e-49,
Organism=Caenorhabditis elegans, GI71982178, Length=276, Percent_Identity=34.7826086956522, Blast_Score=177, Evalue=6e-45,
Organism=Caenorhabditis elegans, GI32563615, Length=232, Percent_Identity=39.2241379310345, Blast_Score=167, Evalue=6e-42,
Organism=Caenorhabditis elegans, GI17505929, Length=374, Percent_Identity=29.144385026738, Blast_Score=166, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17551932, Length=367, Percent_Identity=28.6103542234332, Blast_Score=164, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17531909, Length=250, Percent_Identity=32.8, Blast_Score=139, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17562446, Length=289, Percent_Identity=30.4498269896194, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17531913, Length=187, Percent_Identity=30.4812834224599, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI86563381, Length=271, Percent_Identity=26.9372693726937, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI86563383, Length=271, Percent_Identity=26.9372693726937, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17540912, Length=278, Percent_Identity=24.8201438848921, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17540842, Length=407, Percent_Identity=24.0786240786241, Blast_Score=72, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321233, Length=365, Percent_Identity=25.4794520547945, Blast_Score=63, Evalue=8e-11,
Organism=Drosophila melanogaster, GI21356377, Length=377, Percent_Identity=44.5623342175066, Blast_Score=323, Evalue=1e-88,
Organism=Drosophila melanogaster, GI24646207, Length=379, Percent_Identity=40.3693931398417, Blast_Score=282, Evalue=3e-76,
Organism=Drosophila melanogaster, GI24660351, Length=374, Percent_Identity=40.1069518716578, Blast_Score=268, Evalue=4e-72,
Organism=Drosophila melanogaster, GI24666513, Length=371, Percent_Identity=36.3881401617251, Blast_Score=258, Evalue=6e-69,
Organism=Drosophila melanogaster, GI21355753, Length=386, Percent_Identity=37.8238341968912, Blast_Score=256, Evalue=2e-68,
Organism=Drosophila melanogaster, GI281363737, Length=354, Percent_Identity=40.3954802259887, Blast_Score=248, Evalue=4e-66,
Organism=Drosophila melanogaster, GI19920834, Length=375, Percent_Identity=33.0666666666667, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI45550141, Length=323, Percent_Identity=25.3869969040248, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI221473076, Length=323, Percent_Identity=25.3869969040248, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24652780, Length=320, Percent_Identity=24.6875, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281365206, Length=331, Percent_Identity=24.773413897281, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24585193, Length=331, Percent_Identity=24.773413897281, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24585195, Length=331, Percent_Identity=24.773413897281, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24585191, Length=331, Percent_Identity=24.773413897281, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 42268; Mature: 42268

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNEELRMLRETVRDFAVKEIKPIAREVDEAERVPFETIRKAGNLGLLGIPFPEEYGGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEECCCCHHHCCC
DAGIVGYCILQEEINRYCASTGTIIGAHAQLCGMSIFLSGNDEQKSRYLSKLNEGKLLGA
CCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHCEEEEEECCCHHHHHHHHHCCCCCEEEE
WALTEPNAGSDAASITTTATQDGDDWIINGGKMWITNGSFADVIVVFASTNRERGARGGI
EEECCCCCCCCCCEEEEECCCCCCCEEEECCEEEEECCCCEEEEEEEECCCCCCCCCCCC
SAFIVEKDFAGFKVGKVEEKMGLRASHTASIFFENCRVPAKNVLGEIGAGFGVAMKTLDI
EEEEEECCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHEEC
GRCGLGASALGSAKEAYDLALHYSVERQQFGRPIADFQAIQIKLAEMRTKIYAMEQMVYH
CCCCCCHHHHCCHHHHHHHHHEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAALVDAKKPATLESSMVKLFCTEAASQIIDEAIQIYGGMGFSREVPLERMYRDARVTRI
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
FEGTNEIQKYVIAGEELKKLGHKIKM
HHCHHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure
MELNEELRMLRETVRDFAVKEIKPIAREVDEAERVPFETIRKAGNLGLLGIPFPEEYGGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEECCCCHHHCCC
DAGIVGYCILQEEINRYCASTGTIIGAHAQLCGMSIFLSGNDEQKSRYLSKLNEGKLLGA
CCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHCEEEEEECCCHHHHHHHHHCCCCCEEEE
WALTEPNAGSDAASITTTATQDGDDWIINGGKMWITNGSFADVIVVFASTNRERGARGGI
EEECCCCCCCCCCEEEEECCCCCCCEEEECCEEEEECCCCEEEEEEEECCCCCCCCCCCC
SAFIVEKDFAGFKVGKVEEKMGLRASHTASIFFENCRVPAKNVLGEIGAGFGVAMKTLDI
EEEEEECCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHEEC
GRCGLGASALGSAKEAYDLALHYSVERQQFGRPIADFQAIQIKLAEMRTKIYAMEQMVYH
CCCCCCHHHHCCHHHHHHHHHEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAALVDAKKPATLESSMVKLFCTEAASQIIDEAIQIYGGMGFSREVPLERMYRDARVTRI
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
FEGTNEIQKYVIAGEELKKLGHKIKM
HHCHHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]