Click here to switch to the map view.

The map label for this gene is rfbU [H]

Identifier: 159900898

GI number: 159900898

Start: 5601904

End: 5603040

Strand: Reverse

Name: rfbU [H]

Synonym: Haur_4385

Alternate gene names: 159900898

Gene position: 5603040-5601904 (Counterclockwise)

Preceding gene: 159900899

Following gene: 159900897

Centisome position: 88.28

GC content: 47.49

Gene sequence:

>1137_bases
GTGCGGATTGGGATTAGTGGCACATTTTGGGCTGAACCAATGGTGGGCAGCGGTCAGTATTTACATCATTTAATTGAACA
TTTGCCGCATGTTGGTCCTCAGCACGAATATGTGTTGTTTTTGCCAGCCTATACCCAAGCCGAAATTCCTCAAATTCCGC
ATATTGCGGTTGATCGTGTGCCAACGCCGTTTGATAAACTACACCCTAAATTGGCCAAGCTTTGGTATGAGCAAATTGAG
TTGCCCCGCGCCGCCTTGCGCTTAGCCGTTGATCTGTTGCATGTGCCCTATTATGCGCCGCCACGTCGCCAATTAGTGCC
GACTGTGGTAACAGTCCACGACATTATTCCATTAATTTTGCCTGAATACCGTGGCTCGTTGGCGATGCGAGCCTATACTG
CCCTGGCAACGAGTGCTGTGCGCCGTTGTCGTCAATTGGTGGCAGTCTCCGACCATACCCGCGATGATATTATTGATGTA
TTGAATATTAATGCATTACACGTGCATACAATTTACGAAGGCGTTGCACCTGATTATCAACCGCAGACAGATGAACAGAT
TAGCCAAACCTTGCAACGTTTTAATCTTAATCAGCCTTATTTTTATTATATCGGCGGCTTTGATGTGCGCAAAAATCTCA
CGACATTGCTGCGGGCATTTGGGCGGGTGCGTCGCCGAATTGAGCAACCAATTAAATTAGTGATTGCTGGCAGCCGTCCT
AAGGCTAATTCGCCATTTTTTCCTGCTTTAGAAACCACAATTCTTGATGAAGATTTGGCTGCTGATATTATTTTTACTGG
GCGCGTCACGAATGCTGAAAACGCCGCGCTATTTGCTGGAGCCAGTGCATTTGTTTGGCCCTCGACCTATGAAGGTTTTG
GCTTGCCCCCATTAGAAGCGATGAGTTGTGGTACGCCCGTGATTTCTTCGAATACCAGCAGCATGCCCGAAATTGTCGGC
GAGGCTGGTATTTTGCTGCCGCCACACGATACCGAGGCTTGGGCGATGGCAATGTTGCGCATGTTGAATGATGCTGAATT
AAATAACGAATATCGCCAACGTGGTTTACAACGAGCCAGCCAATTTAATTGGCAACACTTTACCGCCCAGATGCTTAAGG
TTTATGAGAAAGCCTAG

Upstream 100 bases:

>100_bases
TTAATTACGTGGGTGGCGGCGATGTTTGGCCAATAACCGTGGCTGGCTTGAGCACTGGTATAATGCAGCCTGATTGGGCA
CAGTAATGGGAGTAGCTATC

Downstream 100 bases:

>100_bases
GGTTTGATCAGATTTGGATGATTCAGATGCGCTAAATCCTTTAAATTAGCGCATTTTAAACCTGAATCATTGCCAAAAAG
CTTAATTTCTTAGTTAATTA

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MRIGISGTFWAEPMVGSGQYLHHLIEHLPHVGPQHEYVLFLPAYTQAEIPQIPHIAVDRVPTPFDKLHPKLAKLWYEQIE
LPRAALRLAVDLLHVPYYAPPRRQLVPTVVTVHDIIPLILPEYRGSLAMRAYTALATSAVRRCRQLVAVSDHTRDDIIDV
LNINALHVHTIYEGVAPDYQPQTDEQISQTLQRFNLNQPYFYYIGGFDVRKNLTTLLRAFGRVRRRIEQPIKLVIAGSRP
KANSPFFPALETTILDEDLAADIIFTGRVTNAENAALFAGASAFVWPSTYEGFGLPPLEAMSCGTPVISSNTSSMPEIVG
EAGILLPPHDTEAWAMAMLRMLNDAELNNEYRQRGLQRASQFNWQHFTAQMLKVYEKA

Sequences:

>Translated_378_residues
MRIGISGTFWAEPMVGSGQYLHHLIEHLPHVGPQHEYVLFLPAYTQAEIPQIPHIAVDRVPTPFDKLHPKLAKLWYEQIE
LPRAALRLAVDLLHVPYYAPPRRQLVPTVVTVHDIIPLILPEYRGSLAMRAYTALATSAVRRCRQLVAVSDHTRDDIIDV
LNINALHVHTIYEGVAPDYQPQTDEQISQTLQRFNLNQPYFYYIGGFDVRKNLTTLLRAFGRVRRRIEQPIKLVIAGSRP
KANSPFFPALETTILDEDLAADIIFTGRVTNAENAALFAGASAFVWPSTYEGFGLPPLEAMSCGTPVISSNTSSMPEIVG
EAGILLPPHDTEAWAMAMLRMLNDAELNNEYRQRGLQRASQFNWQHFTAQMLKVYEKA
>Mature_378_residues
MRIGISGTFWAEPMVGSGQYLHHLIEHLPHVGPQHEYVLFLPAYTQAEIPQIPHIAVDRVPTPFDKLHPKLAKLWYEQIE
LPRAALRLAVDLLHVPYYAPPRRQLVPTVVTVHDIIPLILPEYRGSLAMRAYTALATSAVRRCRQLVAVSDHTRDDIIDV
LNINALHVHTIYEGVAPDYQPQTDEQISQTLQRFNLNQPYFYYIGGFDVRKNLTTLLRAFGRVRRRIEQPIKLVIAGSRP
KANSPFFPALETTILDEDLAADIIFTGRVTNAENAALFAGASAFVWPSTYEGFGLPPLEAMSCGTPVISSNTSSMPEIVG
EAGILLPPHDTEAWAMAMLRMLNDAELNNEYRQRGLQRASQFNWQHFTAQMLKVYEKA

Specific function: Unknown

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 42626; Mature: 42626

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGISGTFWAEPMVGSGQYLHHLIEHLPHVGPQHEYVLFLPAYTQAEIPQIPHIAVDRV
CEECCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCC
PTPFDKLHPKLAKLWYEQIELPRAALRLAVDLLHVPYYAPPRRQLVPTVVTVHDIIPLIL
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
PEYRGSLAMRAYTALATSAVRRCRQLVAVSDHTRDDIIDVLNINALHVHTIYEGVAPDYQ
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEHHHHHCCCCCCC
PQTDEQISQTLQRFNLNQPYFYYIGGFDVRKNLTTLLRAFGRVRRRIEQPIKLVIAGSRP
CCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
KANSPFFPALETTILDEDLAADIIFTGRVTNAENAALFAGASAFVWPSTYEGFGLPPLEA
CCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCHHH
MSCGTPVISSNTSSMPEIVGEAGILLPPHDTEAWAMAMLRMLNDAELNNEYRQRGLQRAS
HHCCCCCCCCCCCCHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
QFNWQHFTAQMLKVYEKA
HCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRIGISGTFWAEPMVGSGQYLHHLIEHLPHVGPQHEYVLFLPAYTQAEIPQIPHIAVDRV
CEECCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCC
PTPFDKLHPKLAKLWYEQIELPRAALRLAVDLLHVPYYAPPRRQLVPTVVTVHDIIPLIL
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
PEYRGSLAMRAYTALATSAVRRCRQLVAVSDHTRDDIIDVLNINALHVHTIYEGVAPDYQ
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEHHHHHCCCCCCC
PQTDEQISQTLQRFNLNQPYFYYIGGFDVRKNLTTLLRAFGRVRRRIEQPIKLVIAGSRP
CCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
KANSPFFPALETTILDEDLAADIIFTGRVTNAENAALFAGASAFVWPSTYEGFGLPPLEA
CCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCEEEECCCEEECCCCCCCCCCCCHHH
MSCGTPVISSNTSSMPEIVGEAGILLPPHDTEAWAMAMLRMLNDAELNNEYRQRGLQRAS
HHCCCCCCCCCCCCHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
QFNWQHFTAQMLKVYEKA
HCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]