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The map label for this gene is ybgL [C]

Identifier: 159900894

GI number: 159900894

Start: 5597266

End: 5598006

Strand: Reverse

Name: ybgL [C]

Synonym: Haur_4381

Alternate gene names: 159900894

Gene position: 5598006-5597266 (Counterclockwise)

Preceding gene: 159900895

Following gene: 159900893

Centisome position: 88.2

GC content: 51.28

Gene sequence:

>741_bases
ATGATCATCGATCTCAATGCCGATTTGGGCGAAGGCAGCGATTTTGATGCTGAATTAATGTCGCTGCTTTCGTCGTGCAA
TATTGCTTGTGGCGGCCATGCTGGCGATCAAGCAAGCATGCGAACGGCCTTGCAATTGGCTCAGCAACACAACCTTTGTG
TCGGCGCACACCCCAGCTACCCTGATCGGGCGCATTTTGGGCGGGTGGTGCTTGAACTTGAGCCAAGCCAATTGCAAGCT
AGCTTAACCGCGCAGATTACACAGTTACAACGTTTGGCGACTGAGCAAGGGACTAAGGTACACTATGTTAAACCCCATGG
CGCTTTATATAATCAGGCTGCGATTGATTCTGATTTAGCGCAACTGCTGATTACAACAATCCAAACCATCGATCCAAGCC
TTGCGCTGATGGGGTTGGCGGGTAGCTCGTTGCTCGAACAAGCGGCAACGGCGGGCTTGCAAACAATCGCCGAAGGCTTT
ATCGACCGAGCTTACGAAATTGATGGTTGCTTGCGGTCGCGCAGCTTGGCTGGAGCTGTGCATCATGAACCGAATGTGGC
ACTCCAACAGGCTTTAGCGCTTGCCAAAGGCATGCCATTTCCAAGTTATACTAAGCTACCAATTAGGTTAACCGTGCAAA
GTTTGTGTTTGCATAGCGATACCCCGCAAGCACTGGCTTTTGCCCAAGCCGTTCGTACTGCGCTAGTAGCTGAAGCTATT
ACGATTCAAGCGGCCTGCTGA

Upstream 100 bases:

>100_bases
CCCGTTTTTGGTTGCCATCCAAAGGTATAGATAGCAACGTAGTACGCTCGAATTTAGCTGGCCGCTTGCGAGCCAAAGCC
CTAGCCGAGGATTGGCTGGC

Downstream 100 bases:

>100_bases
CGCGCCATGGTCGCTAACTTGCGATGGCGAGTTGGCTATGCTAGACTCGATATAGCACAATCCAGACAGGAGTAGCCTAT
GACAATCACTGATCGCATGT

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MIIDLNADLGEGSDFDAELMSLLSSCNIACGGHAGDQASMRTALQLAQQHNLCVGAHPSYPDRAHFGRVVLELEPSQLQA
SLTAQITQLQRLATEQGTKVHYVKPHGALYNQAAIDSDLAQLLITTIQTIDPSLALMGLAGSSLLEQAATAGLQTIAEGF
IDRAYEIDGCLRSRSLAGAVHHEPNVALQQALALAKGMPFPSYTKLPIRLTVQSLCLHSDTPQALAFAQAVRTALVAEAI
TIQAAC

Sequences:

>Translated_246_residues
MIIDLNADLGEGSDFDAELMSLLSSCNIACGGHAGDQASMRTALQLAQQHNLCVGAHPSYPDRAHFGRVVLELEPSQLQA
SLTAQITQLQRLATEQGTKVHYVKPHGALYNQAAIDSDLAQLLITTIQTIDPSLALMGLAGSSLLEQAATAGLQTIAEGF
IDRAYEIDGCLRSRSLAGAVHHEPNVALQQALALAKGMPFPSYTKLPIRLTVQSLCLHSDTPQALAFAQAVRTALVAEAI
TIQAAC
>Mature_246_residues
MIIDLNADLGEGSDFDAELMSLLSSCNIACGGHAGDQASMRTALQLAQQHNLCVGAHPSYPDRAHFGRVVLELEPSQLQA
SLTAQITQLQRLATEQGTKVHYVKPHGALYNQAAIDSDLAQLLITTIQTIDPSLALMGLAGSSLLEQAATAGLQTIAEGF
IDRAYEIDGCLRSRSLAGAVHHEPNVALQQALALAKGMPFPSYTKLPIRLTVQSLCLHSDTPQALAFAQAVRTALVAEAI
TIQAAC

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family [H]

Homologues:

Organism=Escherichia coli, GI1786931, Length=244, Percent_Identity=43.8524590163934, Blast_Score=196, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR005501 [H]

Pfam domain/function: PF03746 LamB_YcsF [H]

EC number: NA

Molecular weight: Translated: 26049; Mature: 26049

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIDLNADLGEGSDFDAELMSLLSSCNIACGGHAGDQASMRTALQLAQQHNLCVGAHPSY
CEEECCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHCCEEEECCCCC
PDRAHFGRVVLELEPSQLQASLTAQITQLQRLATEQGTKVHYVKPHGALYNQAAIDSDLA
CCCHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
QLLITTIQTIDPSLALMGLAGSSLLEQAATAGLQTIAEGFIDRAYEIDGCLRSRSLAGAV
HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HHEPNVALQQALALAKGMPFPSYTKLPIRLTVQSLCLHSDTPQALAFAQAVRTALVAEAI
CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TIQAAC
HEEECC
>Mature Secondary Structure
MIIDLNADLGEGSDFDAELMSLLSSCNIACGGHAGDQASMRTALQLAQQHNLCVGAHPSY
CEEECCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHCCEEEECCCCC
PDRAHFGRVVLELEPSQLQASLTAQITQLQRLATEQGTKVHYVKPHGALYNQAAIDSDLA
CCCHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
QLLITTIQTIDPSLALMGLAGSSLLEQAATAGLQTIAEGFIDRAYEIDGCLRSRSLAGAV
HHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HHEPNVALQQALALAKGMPFPSYTKLPIRLTVQSLCLHSDTPQALAFAQAVRTALVAEAI
CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TIQAAC
HEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA