| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900858
Identifier: 159900858
GI number: 159900858
Start: 5552911
End: 5553426
Strand: Reverse
Name: 159900858
Synonym: Haur_4345
Alternate gene names: NA
Gene position: 5553426-5552911 (Counterclockwise)
Preceding gene: 159900859
Following gene: 159900857
Centisome position: 87.5
GC content: 48.64
Gene sequence:
>516_bases ATGTCGTGGGAAATCGGCTTAGTTACATTTGGGAGTGTTGTTGGGTTGGTGATTGTGCTATGGGTGTTTAGTCGCTTAGC TTGGGGTGGTGGTATGCGCAATCCATCGTATGAGTTGTTGAATCCAAGCAAAGAACACCCAATTCATACCCATTTTGCCC AACCCGACCAAGAATCGATCGTTGTTCGTTGTAAACAGTGTCACTTTAGTCATACGCTGCCTGAGATTAGTAAAATGCCA GCATTTTTAACCTCAGTGGCCCGCTCCAGCAGCGAAAGTGGCGAGCTTAAGTCAATTTGTCCACATTGCGAGGGTGTGCT CCAAAGCTGGATTCGCCAAGCAATTCAGCATCATGGCAGCCAGCAAACTCTCGATTTTGCAGTATTACGGCGTGGTCAAC GCCGCTTGTACGAAATTGAAACAACCATCTATGCCTCATTGGGCGAGATTCCCCAACCATACCGCAGTTTGGTGGCGGAA GCGCTGAATGAGCCAGAGCCAGAGGAAACTGCATGA
Upstream 100 bases:
>100_bases AGGTGGCACCACGAGAGCTTTGAAGCTCTTCGTCCTTCTCTAGGGACGAAGAGCTTTTTTTAATGTCGAATTTTTACCCA GCCAACGTTTGAGGTTTGTG
Downstream 100 bases:
>100_bases TTATTCGAGGCGATCAAGCCGATTTAATTCATAATCACGAGGGTCGTCTAGCACCCAATCAACAACGTCAACTTCAGGCG ATGCGAGCGTTTCGCGTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MSWEIGLVTFGSVVGLVIVLWVFSRLAWGGGMRNPSYELLNPSKEHPIHTHFAQPDQESIVVRCKQCHFSHTLPEISKMP AFLTSVARSSSESGELKSICPHCEGVLQSWIRQAIQHHGSQQTLDFAVLRRGQRRLYEIETTIYASLGEIPQPYRSLVAE ALNEPEPEETA
Sequences:
>Translated_171_residues MSWEIGLVTFGSVVGLVIVLWVFSRLAWGGGMRNPSYELLNPSKEHPIHTHFAQPDQESIVVRCKQCHFSHTLPEISKMP AFLTSVARSSSESGELKSICPHCEGVLQSWIRQAIQHHGSQQTLDFAVLRRGQRRLYEIETTIYASLGEIPQPYRSLVAE ALNEPEPEETA >Mature_170_residues SWEIGLVTFGSVVGLVIVLWVFSRLAWGGGMRNPSYELLNPSKEHPIHTHFAQPDQESIVVRCKQCHFSHTLPEISKMPA FLTSVARSSSESGELKSICPHCEGVLQSWIRQAIQHHGSQQTLDFAVLRRGQRRLYEIETTIYASLGEIPQPYRSLVAEA LNEPEPEETA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19224; Mature: 19093
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWEIGLVTFGSVVGLVIVLWVFSRLAWGGGMRNPSYELLNPSKEHPIHTHFAQPDQESI CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHH VVRCKQCHFSHTLPEISKMPAFLTSVARSSSESGELKSICPHCEGVLQSWIRQAIQHHGS HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC QQTLDFAVLRRGQRRLYEIETTIYASLGEIPQPYRSLVAEALNEPEPEETA CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SWEIGLVTFGSVVGLVIVLWVFSRLAWGGGMRNPSYELLNPSKEHPIHTHFAQPDQESI CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHH VVRCKQCHFSHTLPEISKMPAFLTSVARSSSESGELKSICPHCEGVLQSWIRQAIQHHGS HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC QQTLDFAVLRRGQRRLYEIETTIYASLGEIPQPYRSLVAEALNEPEPEETA CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA