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The map label for this gene is ybgJ [H]

Identifier: 159900859

GI number: 159900859

Start: 5553754

End: 5554359

Strand: Reverse

Name: ybgJ [H]

Synonym: Haur_4346

Alternate gene names: 159900859

Gene position: 5554359-5553754 (Counterclockwise)

Preceding gene: 159900860

Following gene: 159900858

Centisome position: 87.52

GC content: 49.67

Gene sequence:

>606_bases
ATGCTGAAGATTGAACTATTTGGCGATAGTGCCTTGTTAATTACTACTCCGCAGCCAGCTCAATTGGCGTTGGCGCTGCG
TCATGCTCGTTTGCGCGGGGTAATTGATGTGGTTACTGGTTTGGCAACAGTTACGGTCTTGTTTGATTTGCAGTTGACGA
ATGCTCGCCAGGTGCGGCGGCAAATTCAGCGACTGCAATCAGGCCAATCAAATTTGCCAACACCGACCATCCATCGAATT
CCAATTTGTTACGATGGAATTGATTTGGCTGAGGTTGCCGAACGCTGCCAATTAACTATCGATCAAGTGATAGGCTTCCA
TTCCAGCGCCGAATATCGGGTGGCGATGGTTGGATTTTTGCCAGGCTTTCCCTACCTTGATGGCTTGCCTGCGGCCTTGC
ATTTGCCAAGGCGGGCGACTCCCCGCGCTAAAGTTGCGGCTGGCTCAGTGGCAATTGCCAACGATCAGACGAGTATTTAT
CCTCAAAGTTCGCCTGGTGGCTGGCATATACTTGGCACTACTCCACTGCGTTTATTTGATCCACAAGCCGATCCGCCAGC
ATTGTTGAATGCCGGTGATTTAGTTTATTTTGCGCCAATTGATTAA

Upstream 100 bases:

>100_bases
TGTATTTGTGAAATTCGTGCAATTCGTGGCTCAAAACGGTTTTTCGTGCTCTTTGTGCTCTTCGTGGTTACAAGCTCTAT
CTCTTTGCTCTGTTTAAACT

Downstream 100 bases:

>100_bases
GTGATGGCGTTTTGGCTAGCAGCTAAAACCATTGGCTTTCGTGGTATAATAGCGCCACTGATGTTGACGAAATCCGTGGA
TTGGGCCTATTTGTTCTTCA

Product: allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MLKIELFGDSALLITTPQPAQLALALRHARLRGVIDVVTGLATVTVLFDLQLTNARQVRRQIQRLQSGQSNLPTPTIHRI
PICYDGIDLAEVAERCQLTIDQVIGFHSSAEYRVAMVGFLPGFPYLDGLPAALHLPRRATPRAKVAAGSVAIANDQTSIY
PQSSPGGWHILGTTPLRLFDPQADPPALLNAGDLVYFAPID

Sequences:

>Translated_201_residues
MLKIELFGDSALLITTPQPAQLALALRHARLRGVIDVVTGLATVTVLFDLQLTNARQVRRQIQRLQSGQSNLPTPTIHRI
PICYDGIDLAEVAERCQLTIDQVIGFHSSAEYRVAMVGFLPGFPYLDGLPAALHLPRRATPRAKVAAGSVAIANDQTSIY
PQSSPGGWHILGTTPLRLFDPQADPPALLNAGDLVYFAPID
>Mature_201_residues
MLKIELFGDSALLITTPQPAQLALALRHARLRGVIDVVTGLATVTVLFDLQLTNARQVRRQIQRLQSGQSNLPTPTIHRI
PICYDGIDLAEVAERCQLTIDQVIGFHSSAEYRVAMVGFLPGFPYLDGLPAALHLPRRATPRAKVAAGSVAIANDQTSIY
PQSSPGGWHILGTTPLRLFDPQADPPALLNAGDLVYFAPID

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=205, Percent_Identity=41.4634146341463, Blast_Score=144, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 21778; Mature: 21778

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIELFGDSALLITTPQPAQLALALRHARLRGVIDVVTGLATVTVLFDLQLTNARQVRR
CEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHEEEEEECCHHHHHH
QIQRLQSGQSNLPTPTIHRIPICYDGIDLAEVAERCQLTIDQVIGFHSSAEYRVAMVGFL
HHHHHHCCCCCCCCCCEEECEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
PGFPYLDGLPAALHLPRRATPRAKVAAGSVAIANDQTSIYPQSSPGGWHILGTTPLRLFD
CCCCCCCCCCHHHCCCCCCCCCCEEECCEEEEECCCCEECCCCCCCCEEEEECCCEEEEC
PQADPPALLNAGDLVYFAPID
CCCCCCCEECCCCEEEEEECC
>Mature Secondary Structure
MLKIELFGDSALLITTPQPAQLALALRHARLRGVIDVVTGLATVTVLFDLQLTNARQVRR
CEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHEEEEEECCHHHHHH
QIQRLQSGQSNLPTPTIHRIPICYDGIDLAEVAERCQLTIDQVIGFHSSAEYRVAMVGFL
HHHHHHCCCCCCCCCCEEECEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
PGFPYLDGLPAALHLPRRATPRAKVAAGSVAIANDQTSIYPQSSPGGWHILGTTPLRLFD
CCCCCCCCCCHHHCCCCCCCCCCEEECCEEEEECCCCEECCCCCCCCEEEEECCCEEEEC
PQADPPALLNAGDLVYFAPID
CCCCCCCEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]