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The map label for this gene is rlmM [H]

Identifier: 159900817

GI number: 159900817

Start: 5495457

End: 5496521

Strand: Reverse

Name: rlmM [H]

Synonym: Haur_4304

Alternate gene names: 159900817

Gene position: 5496521-5495457 (Counterclockwise)

Preceding gene: 159900818

Following gene: 159900816

Centisome position: 86.61

GC content: 52.58

Gene sequence:

>1065_bases
GTGCTTGATACCTATCGTGTTTTAATTAGTGCTGCGCCCGAGATGCTTGAGGCAGCGATAGATGAAATTCGTTATGGCAA
ATATGGGGTTGCCGTTCAACGGCTCGCGCCAGAAGTGGCCTTGGTTGAGTTAGAGCAACCACTCGCTGAATGGCACGCCT
TCTTGCTCAAACGGCCAGCCATTTTTGTGCGCCATATCGCGCCAGTTCATCGTGAAGTCGTGCTCGAAGGTACGCCTGAT
GATTTAGAACGCCTAACCCAAGTGGCCTTGAATCTTGCGCCACATTTGCCAGCCCGTAAACCATTTGCGGTGCAAACTCG
CTTGCTTGATGAACATGTCAAATTAACCCGCTTTGAAATTAACCAAGCCTTGGCCGAAGCAGTTTCGCAAGTCAGCGGGC
TACCCTTGGATGTACGCAATCCGCAGGGCGTGCTTTCGGTTGCTCTGAGCATGGATCGGGCTTATTTGGGTGTTTCGACC
GTGGAATTTAATCGCTCGGCTTGGGCGGGTGGCGCACACCGCTTTGCCCGCGAACAAGGCCAATTAAGCCGCGCTGAATT
TAAATTGCTCGAAGCCCAAGCCTTATTCAACATCGAATGGCCCGACCATGGCCAAGCCTTGGATTTAGGGGCTGCGCCTG
GTGGTTGGACGCGCATTTTGCGGCGAGCAGGCCTGCCAGTAGTCGCGATCGACCCAGCCGATTTGCACCCCAGCTTGCGC
TACGATCAAGGCGTGCGCCATTTGCAAATCTTGGCTCAGCGCTTTTTGCCTACCCAAGAGCGTTTTACCGTGATCGTTAA
TGATATGCGGATCGATGCGCGTGATTCGGCGTGGCTGATGGTTGATTCAGCCAATGCCTTGACCAACGATGGTTTAGCGG
TGGTGACACTCAAATTGCCGCATGAACATAGTGCCCAAATCGCCTATCACTCGCTGAGTATTTTGCGCACGGCCTATTGG
GTGATTGGGGCACGTCAACTGTTCCATAATCGCTCGGAAGTGACTGCTGTGCTGCGTAAAAAACATGAAAAACGCCCCAA
ACCTGAGCAATTGCCAAAAGATTAA

Upstream 100 bases:

>100_bases
GAATTAACTGTATCAAGGCATGTAGGTTAAATGGAATGGGCTGGATCAAGGAACTTTTGCCCTTTGCCCTTTGCCTTTTG
CCTTTCTAAAGGACTTTTTT

Downstream 100 bases:

>100_bases
TTGCGATCCACGAAGGGCACGAAGTTGCACGAAGAATGAAACCGTGAAGCACATGAAGGCTGAATTCTTTTCGCCACGAA
TTGCACAAATCCTTGCTTTC

Product: THUMP domain-containing protein

Products: NA

Alternate protein names: 23S rRNA 2'-O-ribose methyltransferase rlmM [H]

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MLDTYRVLISAAPEMLEAAIDEIRYGKYGVAVQRLAPEVALVELEQPLAEWHAFLLKRPAIFVRHIAPVHREVVLEGTPD
DLERLTQVALNLAPHLPARKPFAVQTRLLDEHVKLTRFEINQALAEAVSQVSGLPLDVRNPQGVLSVALSMDRAYLGVST
VEFNRSAWAGGAHRFAREQGQLSRAEFKLLEAQALFNIEWPDHGQALDLGAAPGGWTRILRRAGLPVVAIDPADLHPSLR
YDQGVRHLQILAQRFLPTQERFTVIVNDMRIDARDSAWLMVDSANALTNDGLAVVTLKLPHEHSAQIAYHSLSILRTAYW
VIGARQLFHNRSEVTAVLRKKHEKRPKPEQLPKD

Sequences:

>Translated_354_residues
MLDTYRVLISAAPEMLEAAIDEIRYGKYGVAVQRLAPEVALVELEQPLAEWHAFLLKRPAIFVRHIAPVHREVVLEGTPD
DLERLTQVALNLAPHLPARKPFAVQTRLLDEHVKLTRFEINQALAEAVSQVSGLPLDVRNPQGVLSVALSMDRAYLGVST
VEFNRSAWAGGAHRFAREQGQLSRAEFKLLEAQALFNIEWPDHGQALDLGAAPGGWTRILRRAGLPVVAIDPADLHPSLR
YDQGVRHLQILAQRFLPTQERFTVIVNDMRIDARDSAWLMVDSANALTNDGLAVVTLKLPHEHSAQIAYHSLSILRTAYW
VIGARQLFHNRSEVTAVLRKKHEKRPKPEQLPKD
>Mature_354_residues
MLDTYRVLISAAPEMLEAAIDEIRYGKYGVAVQRLAPEVALVELEQPLAEWHAFLLKRPAIFVRHIAPVHREVVLEGTPD
DLERLTQVALNLAPHLPARKPFAVQTRLLDEHVKLTRFEINQALAEAVSQVSGLPLDVRNPQGVLSVALSMDRAYLGVST
VEFNRSAWAGGAHRFAREQGQLSRAEFKLLEAQALFNIEWPDHGQALDLGAAPGGWTRILRRAGLPVVAIDPADLHPSLR
YDQGVRHLQILAQRFLPTQERFTVIVNDMRIDARDSAWLMVDSANALTNDGLAVVTLKLPHEHSAQIAYHSLSILRTAYW
VIGARQLFHNRSEVTAVLRKKHEKRPKPEQLPKD

Specific function: Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA [H]

COG id: COG2933

COG function: function code R; Predicted SAM-dependent methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RlmE family. RlmM subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011224
- InterPro:   IPR002877 [H]

Pfam domain/function: PF01728 FtsJ [H]

EC number: NA

Molecular weight: Translated: 39690; Mature: 39690

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS51165 THUMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDTYRVLISAAPEMLEAAIDEIRYGKYGVAVQRLAPEVALVELEQPLAEWHAFLLKRPA
CCCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHH
IFVRHIAPVHREVVLEGTPDDLERLTQVALNLAPHLPARKPFAVQTRLLDEHVKLTRFEI
HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NQALAEAVSQVSGLPLDVRNPQGVLSVALSMDRAYLGVSTVEFNRSAWAGGAHRFAREQG
HHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHC
QLSRAEFKLLEAQALFNIEWPDHGQALDLGAAPGGWTRILRRAGLPVVAIDPADLHPSLR
CHHHHHHHHHHHHHEEEECCCCCCCEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC
YDQGVRHLQILAQRFLPTQERFTVIVNDMRIDARDSAWLMVDSANALTNDGLAVVTLKLP
HHHHHHHHHHHHHHHCCCCHHEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECC
HEHSAQIAYHSLSILRTAYWVIGARQLFHNRSEVTAVLRKKHEKRPKPEQLPKD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLDTYRVLISAAPEMLEAAIDEIRYGKYGVAVQRLAPEVALVELEQPLAEWHAFLLKRPA
CCCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHH
IFVRHIAPVHREVVLEGTPDDLERLTQVALNLAPHLPARKPFAVQTRLLDEHVKLTRFEI
HHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NQALAEAVSQVSGLPLDVRNPQGVLSVALSMDRAYLGVSTVEFNRSAWAGGAHRFAREQG
HHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHC
QLSRAEFKLLEAQALFNIEWPDHGQALDLGAAPGGWTRILRRAGLPVVAIDPADLHPSLR
CHHHHHHHHHHHHHEEEECCCCCCCEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCCC
YDQGVRHLQILAQRFLPTQERFTVIVNDMRIDARDSAWLMVDSANALTNDGLAVVTLKLP
HHHHHHHHHHHHHHHCCCCHHEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECC
HEHSAQIAYHSLSILRTAYWVIGARQLFHNRSEVTAVLRKKHEKRPKPEQLPKD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA