Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 159900716

GI number: 159900716

Start: 5357769

End: 5358356

Strand: Direct

Name: pdtaR [H]

Synonym: Haur_4203

Alternate gene names: 159900716

Gene position: 5357769-5358356 (Clockwise)

Preceding gene: 159900710

Following gene: 159900717

Centisome position: 84.42

GC content: 54.08

Gene sequence:

>588_bases
ATGCCACAGACACGCATTGTCATCGCCGATGACGAATCGCTGATTCGCATGAATCTGCGTGAAACGTTAGTTGGCCTCGG
CTATCTTGTCGTTGGGGAAGCTGGTGATGGCGTGAGCGTTATCAACCTTGCCCGCGAACTACGCCCCGACGTAGTGGTGA
TGGACATCAAAATGCCCAAACTGGATGGTATCCAGGCAGCCAAAGTGCTGACTGAAGAGAAAATTGCCCCGGTCTTGCTC
TTGACCGCCCACAGCGACAAAGAGTTGGTCGAGCGCGCCCGCGACGCTGGTGTTGTGGGGTATCTCAGCAAGCCCTTTCG
CGATAGCGATTTGATGCCAGCACTCGAAATTGCCCGCGCCCGTTTTGAAGAGTTCCTGACCCTCGAACAACAAGTCGGCG
ACCTGAAGGAAACGCTCGAAACTCGCAAGATTATCGAACGCGCCAAGGGTATGTTAATGGATTCTCAAGGGCTGAAGGAG
TCGGAAGCCTTCCGCAAGATTCAGCAGTTGAGCATGAATACCCGCAAGTCGATGCGCGAAGTTGCCTCGGCCTTGCTGTT
GGCCAACCAGATGGAGCAACAAAAGTAA

Upstream 100 bases:

>100_bases
TTTACTCATTATGGTTGCTTGCCCTGAATACCGCAGCATGCTATACTTGCGTACATTCATCGAAGCTACGATGACCGATT
AAGCACCCGGAGGAAACCGT

Downstream 100 bases:

>100_bases
GTGATGCTGCGTCGCCCCTCTCAGCAACAACTGGTCGCTGTGCTGCGGGCGACGTTGCCTTTATTGCTGGCCGCCTTTTT
GGGCGGCTTGTTGGCTTTAG

Product: response regulator receiver/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MPQTRIVIADDESLIRMNLRETLVGLGYLVVGEAGDGVSVINLARELRPDVVVMDIKMPKLDGIQAAKVLTEEKIAPVLL
LTAHSDKELVERARDAGVVGYLSKPFRDSDLMPALEIARARFEEFLTLEQQVGDLKETLETRKIIERAKGMLMDSQGLKE
SEAFRKIQQLSMNTRKSMREVASALLLANQMEQQK

Sequences:

>Translated_195_residues
MPQTRIVIADDESLIRMNLRETLVGLGYLVVGEAGDGVSVINLARELRPDVVVMDIKMPKLDGIQAAKVLTEEKIAPVLL
LTAHSDKELVERARDAGVVGYLSKPFRDSDLMPALEIARARFEEFLTLEQQVGDLKETLETRKIIERAKGMLMDSQGLKE
SEAFRKIQQLSMNTRKSMREVASALLLANQMEQQK
>Mature_194_residues
PQTRIVIADDESLIRMNLRETLVGLGYLVVGEAGDGVSVINLARELRPDVVVMDIKMPKLDGIQAAKVLTEEKIAPVLLL
TAHSDKELVERARDAGVVGYLSKPFRDSDLMPALEIARARFEEFLTLEQQVGDLKETLETRKIIERAKGMLMDSQGLKES
EAFRKIQQLSMNTRKSMREVASALLLANQMEQQK

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=104, Percent_Identity=38.4615384615385, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790299, Length=170, Percent_Identity=30, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788222, Length=112, Percent_Identity=32.1428571428571, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788191, Length=112, Percent_Identity=33.9285714285714, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21835; Mature: 21704

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQTRIVIADDESLIRMNLRETLVGLGYLVVGEAGDGVSVINLARELRPDVVVMDIKMPK
CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC
LDGIQAAKVLTEEKIAPVLLLTAHSDKELVERARDAGVVGYLSKPFRDSDLMPALEIARA
CCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHH
RFEEFLTLEQQVGDLKETLETRKIIERAKGMLMDSQGLKESEAFRKIQQLSMNTRKSMRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH
VASALLLANQMEQQK
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
PQTRIVIADDESLIRMNLRETLVGLGYLVVGEAGDGVSVINLARELRPDVVVMDIKMPK
CCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC
LDGIQAAKVLTEEKIAPVLLLTAHSDKELVERARDAGVVGYLSKPFRDSDLMPALEIARA
CCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHH
RFEEFLTLEQQVGDLKETLETRKIIERAKGMLMDSQGLKESEAFRKIQQLSMNTRKSMRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH
VASALLLANQMEQQK
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]