Click here to switch to the map view.

The map label for this gene is atpC

Identifier: 159900586

GI number: 159900586

Start: 5199554

End: 5199964

Strand: Direct

Name: atpC

Synonym: Haur_4073

Alternate gene names: 159900586

Gene position: 5199554-5199964 (Clockwise)

Preceding gene: 159900585

Following gene: 159900587

Centisome position: 81.93

GC content: 54.99

Gene sequence:

>411_bases
ATGCCAATCCAATTGGAAATCGTCACCGCTGAGCGCGTGGTTCTTTCCGAAGAAGTCGATATGGTCAGTGCGCCTTCAGT
CGAGGGTCGGGTGGGGATTTTGCCTCGCCACGAGCCATTGCTGACGGTGTTGCAACCAGGCGAATTGCACTATGTGAAAA
ATGGTGTTAGCATGCCCTACGCTATCAGCGGTGGCTTCATGGAAGTCTTGCCAAATCGCGTGACGATTTTGGCCGATACC
GCTGAACGCGCTGATGAAATCGATGAAACCCGCGCCGAACAAGCTCGCTTGCAAGCCGAACAAGCTATGCGCGATCGTCA
AAGCACCGAGGATCTTGCTCGGGCCGAGATTGCCTTGCGCCGCGCCACAGTTCGTTTGCAAGTTGCGAAATTGCGCCGCA
ACCGTCAATAG

Upstream 100 bases:

>100_bases
CAATAATCGATCAATGATTATCTGACCCTGCGCCGGCTGGAACGGGCATTAGTCCCCGCCCCATTCCGGCGCATTGTCTA
TAATCGCTGTGAGGATGTGT

Downstream 100 bases:

>100_bases
TAGGTAGCATGAGTGTAAAGAACATCAGCTATTATCCATGGCCTTTAAACCTGTGATGATCGGTTGGTGTTCTTTATGCG
TTTGGAATAATTAAGGTATG

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MPIQLEIVTAERVVLSEEVDMVSAPSVEGRVGILPRHEPLLTVLQPGELHYVKNGVSMPYAISGGFMEVLPNRVTILADT
AERADEIDETRAEQARLQAEQAMRDRQSTEDLARAEIALRRATVRLQVAKLRRNRQ

Sequences:

>Translated_136_residues
MPIQLEIVTAERVVLSEEVDMVSAPSVEGRVGILPRHEPLLTVLQPGELHYVKNGVSMPYAISGGFMEVLPNRVTILADT
AERADEIDETRAEQARLQAEQAMRDRQSTEDLARAEIALRRATVRLQVAKLRRNRQ
>Mature_135_residues
PIQLEIVTAERVVLSEEVDMVSAPSVEGRVGILPRHEPLLTVLQPGELHYVKNGVSMPYAISGGFMEVLPNRVTILADTA
ERADEIDETRAEQARLQAEQAMRDRQSTEDLARAEIALRRATVRLQVAKLRRNRQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

Organism=Escherichia coli, GI1790169, Length=135, Percent_Identity=37.7777777777778, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_HERA2 (A9AVV5)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001546833.1
- ProteinModelPortal:   A9AVV5
- SMR:   A9AVV5
- GeneID:   5735931
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_4073
- HOGENOM:   HBG663981
- OMA:   SAEASIF
- ProtClustDB:   PRK14735
- BioCyc:   HAUR316274:HAUR_4073-MONOMER
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020547
- InterPro:   IPR020546
- Gene3D:   G3DSA:1.20.5.440
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF00401 ATP-synt_DE; PF02823 ATP-synt_DE_N; SSF46604 ATPsynt_DE; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 15255; Mature: 15124

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIQLEIVTAERVVLSEEVDMVSAPSVEGRVGILPRHEPLLTVLQPGELHYVKNGVSMPY
CCEEEEEEECHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEECCCCCCE
AISGGFMEVLPNRVTILADTAERADEIDETRAEQARLQAEQAMRDRQSTEDLARAEIALR
EECCCHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RATVRLQVAKLRRNRQ
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PIQLEIVTAERVVLSEEVDMVSAPSVEGRVGILPRHEPLLTVLQPGELHYVKNGVSMPY
CEEEEEEECHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEECCCCCCE
AISGGFMEVLPNRVTILADTAERADEIDETRAEQARLQAEQAMRDRQSTEDLARAEIALR
EECCCHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RATVRLQVAKLRRNRQ
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA