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The map label for this gene is atpD

Identifier: 159900585

GI number: 159900585

Start: 5198044

End: 5199459

Strand: Direct

Name: atpD

Synonym: Haur_4072

Alternate gene names: 159900585

Gene position: 5198044-5199459 (Clockwise)

Preceding gene: 159900584

Following gene: 159900586

Centisome position: 81.9

GC content: 53.39

Gene sequence:

>1416_bases
ATGGCAACTGGAAAAATTTTACAAATTACTGGCGTGGTTATCGACGCAGAATTTCCTGCCGATGGCCTGCCACAAATTTA
TAACGCGTTGGAAATTCCCTTGGGCGAAGGCCGCTCATCGCTGATCTGCGAAGTCCAACAGCAGTTGGGTGATAGCGTGG
TTCGCGCGGTCGCTATGTCCACCACCGACGGCCTTGTCCGTGGGATGGACGTAATCGACACTGGCGCACCAATCAGCGTG
CCAGTCGGCCCCGAAACCTTGGGTCGGGTGTTCGACGTTCAAGGTCGGCCAATCGACGGTGAAGGCGCGGTTGGTACTAC
CAAAACCATGCCAATTCACCGCCCAGCCCCAACCTTTGAAGAACAGTCAAACCGCGCCGAGTTGTTCGAAACCGGCATCA
AGGTTATCGACTTGATCGCGCCCTTCACCAAGGGTGGTAAAACTGGGGTGTTCGGTGGCGCAGGTGTGGGCAAGACCGTT
ATTATCCAAGAGTTGATCTCGAATATCGCTAAAGAACAATCCGGTTACTCGGTGTTCGCAGGCGTAGGCGAGCGCTCACG
CGAAGGTAACGACTTGATCCACGAAATGAAGGATTCAAAGATTCCTGGCACCGACCAAACCGTGTTCGATAAAACGGTGA
TGGTGTTCGGTCAAATGAACGAACCACCAGGAGCACGCTTGCGGGTGGCGCTTTCAGCCTTGACCATGGCTGAATACTTC
CGCGAAGAAGGCCGCGACGTACTCTTGTTCGTCGATAACATCTTCCGCTTTACCCAAGCAGGTTCGGAAGTATCGGCGCT
CTTGGGCCGGATGCCTTCACAGGTGGGTTACCAACCAACCTTGGGTACCGAGATGGGTGAATTGCAAGAACGCATCACTT
CGACCAAGACTGGCTCGATTACCTCGTTGCAAGCCGTCTACGTGCCTGCTGACGACTACACCGACCCAGCTCCAGCGACA
ACCTTTGCTCACTTGGATGCAACGATTTCGCTGGAACGCTCGATCTCAGAAAAAGGTATCTATCCTGCGGTGGACCCACT
GGCTTCAACCAGCCGGATTCTCGACCCCAACATTGTGGGCGAAGAACACTACCGCGTCGCGACCGAAGTTCAACGGATGT
TGCAACGCTACAAAGACTTGCAAGATATTATTGCAATTTTGGGTGTCGAAGAATTGTCAGACGACGACAAATTGACAGTT
TCACGCGCCCGCAAGCTCGAACGCTTCTTCTCACAACCATTCGGCGTGGCTGAAGTGTTTACCAACATTCCAGGCAAGTA
TGTCGCGGTTGGCGATACCGTCAAGAGCTTTGCCCGCGTCTTAGCAGGCGAGTTCGACCACATTCCCGAAAGCTTCTTCT
TTATGAAGGGTGGCATCGACGATGTGGTAGCCGCTTACGATGCGTCAAAGCAATAA

Upstream 100 bases:

>100_bases
CTATCACCACTGAGATTAGCGAAATCGCCGCTGGTGCAACAGCGCTCAACCAATAATCAGCTAGTATTTGCTAGTGATTG
TTGACCATTTGGAGAATTCC

Downstream 100 bases:

>100_bases
TCGATCAATGATTATCTGACCCTGCGCCGGCTGGAACGGGCATTAGTCCCCGCCCCATTCCGGCGCATTGTCTATAATCG
CTGTGAGGATGTGTATGCCA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MATGKILQITGVVIDAEFPADGLPQIYNALEIPLGEGRSSLICEVQQQLGDSVVRAVAMSTTDGLVRGMDVIDTGAPISV
PVGPETLGRVFDVQGRPIDGEGAVGTTKTMPIHRPAPTFEEQSNRAELFETGIKVIDLIAPFTKGGKTGVFGGAGVGKTV
IIQELISNIAKEQSGYSVFAGVGERSREGNDLIHEMKDSKIPGTDQTVFDKTVMVFGQMNEPPGARLRVALSALTMAEYF
REEGRDVLLFVDNIFRFTQAGSEVSALLGRMPSQVGYQPTLGTEMGELQERITSTKTGSITSLQAVYVPADDYTDPAPAT
TFAHLDATISLERSISEKGIYPAVDPLASTSRILDPNIVGEEHYRVATEVQRMLQRYKDLQDIIAILGVEELSDDDKLTV
SRARKLERFFSQPFGVAEVFTNIPGKYVAVGDTVKSFARVLAGEFDHIPESFFFMKGGIDDVVAAYDASKQ

Sequences:

>Translated_471_residues
MATGKILQITGVVIDAEFPADGLPQIYNALEIPLGEGRSSLICEVQQQLGDSVVRAVAMSTTDGLVRGMDVIDTGAPISV
PVGPETLGRVFDVQGRPIDGEGAVGTTKTMPIHRPAPTFEEQSNRAELFETGIKVIDLIAPFTKGGKTGVFGGAGVGKTV
IIQELISNIAKEQSGYSVFAGVGERSREGNDLIHEMKDSKIPGTDQTVFDKTVMVFGQMNEPPGARLRVALSALTMAEYF
REEGRDVLLFVDNIFRFTQAGSEVSALLGRMPSQVGYQPTLGTEMGELQERITSTKTGSITSLQAVYVPADDYTDPAPAT
TFAHLDATISLERSISEKGIYPAVDPLASTSRILDPNIVGEEHYRVATEVQRMLQRYKDLQDIIAILGVEELSDDDKLTV
SRARKLERFFSQPFGVAEVFTNIPGKYVAVGDTVKSFARVLAGEFDHIPESFFFMKGGIDDVVAAYDASKQ
>Mature_470_residues
ATGKILQITGVVIDAEFPADGLPQIYNALEIPLGEGRSSLICEVQQQLGDSVVRAVAMSTTDGLVRGMDVIDTGAPISVP
VGPETLGRVFDVQGRPIDGEGAVGTTKTMPIHRPAPTFEEQSNRAELFETGIKVIDLIAPFTKGGKTGVFGGAGVGKTVI
IQELISNIAKEQSGYSVFAGVGERSREGNDLIHEMKDSKIPGTDQTVFDKTVMVFGQMNEPPGARLRVALSALTMAEYFR
EEGRDVLLFVDNIFRFTQAGSEVSALLGRMPSQVGYQPTLGTEMGELQERITSTKTGSITSLQAVYVPADDYTDPAPATT
FAHLDATISLERSISEKGIYPAVDPLASTSRILDPNIVGEEHYRVATEVQRMLQRYKDLQDIIAILGVEELSDDDKLTVS
RARKLERFFSQPFGVAEVFTNIPGKYVAVGDTVKSFARVLAGEFDHIPESFFFMKGGIDDVVAAYDASKQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=468, Percent_Identity=64.957264957265, Blast_Score=608, Evalue=1e-174,
Organism=Homo sapiens, GI19913424, Length=324, Percent_Identity=27.7777777777778, Blast_Score=132, Evalue=7e-31,
Organism=Homo sapiens, GI50345984, Length=304, Percent_Identity=27.9605263157895, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI4757810, Length=304, Percent_Identity=27.9605263157895, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI19913428, Length=408, Percent_Identity=25.9803921568627, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI19913426, Length=456, Percent_Identity=24.3421052631579, Blast_Score=102, Evalue=7e-22,
Organism=Escherichia coli, GI1790170, Length=463, Percent_Identity=65.658747300216, Blast_Score=621, Evalue=1e-179,
Organism=Escherichia coli, GI1788251, Length=338, Percent_Identity=30.1775147928994, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI1790172, Length=316, Percent_Identity=26.8987341772152, Blast_Score=108, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=63.519313304721, Blast_Score=592, Evalue=1e-169,
Organism=Caenorhabditis elegans, GI17565854, Length=325, Percent_Identity=27.6923076923077, Blast_Score=137, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17510931, Length=357, Percent_Identity=26.6106442577031, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=398, Percent_Identity=25.1256281407035, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71988080, Length=374, Percent_Identity=25.4010695187166, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71988063, Length=374, Percent_Identity=25.4010695187166, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71988074, Length=272, Percent_Identity=24.2647058823529, Blast_Score=86, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=65.5844155844156, Blast_Score=604, Evalue=1e-174,
Organism=Saccharomyces cerevisiae, GI6319603, Length=404, Percent_Identity=26.7326732673267, Blast_Score=117, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6319370, Length=422, Percent_Identity=25.3554502369668, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=254, Percent_Identity=25.1968503937008, Blast_Score=101, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24638766, Length=468, Percent_Identity=63.8888888888889, Blast_Score=590, Evalue=1e-169,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=61.505376344086, Blast_Score=556, Evalue=1e-158,
Organism=Drosophila melanogaster, GI24583992, Length=332, Percent_Identity=28.9156626506024, Blast_Score=142, Evalue=4e-34,
Organism=Drosophila melanogaster, GI24583988, Length=332, Percent_Identity=28.6144578313253, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24583986, Length=332, Percent_Identity=28.6144578313253, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24583984, Length=332, Percent_Identity=28.6144578313253, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI20129479, Length=319, Percent_Identity=28.2131661442006, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24658560, Length=304, Percent_Identity=28.6184210526316, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI281361666, Length=407, Percent_Identity=25.5528255528256, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24646341, Length=407, Percent_Identity=25.5528255528256, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI17136796, Length=407, Percent_Identity=25.5528255528256, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24638768, Length=95, Percent_Identity=51.5789473684211, Blast_Score=92, Evalue=8e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_HERA2 (A9AVV4)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001546832.1
- ProteinModelPortal:   A9AVV4
- SMR:   A9AVV4
- GeneID:   5735930
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_4072
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- BioCyc:   HAUR316274:HAUR_4072-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50910; Mature: 50779

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKILQITGVVIDAEFPADGLPQIYNALEIPLGEGRSSLICEVQQQLGDSVVRAVAMS
CCCCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TTDGLVRGMDVIDTGAPISVPVGPETLGRVFDVQGRPIDGEGAVGTTKTMPIHRPAPTFE
CHHHHHHCCHHCCCCCCEECCCCHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
EQSNRAELFETGIKVIDLIAPFTKGGKTGVFGGAGVGKTVIIQELISNIAKEQSGYSVFA
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
GVGERSREGNDLIHEMKDSKIPGTDQTVFDKTVMVFGQMNEPPGARLRVALSALTMAEYF
CCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHH
REEGRDVLLFVDNIFRFTQAGSEVSALLGRMPSQVGYQPTLGTEMGELQERITSTKTGSI
HHCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHCCCCCCC
TSLQAVYVPADDYTDPAPATTFAHLDATISLERSISEKGIYPAVDPLASTSRILDPNIVG
EEEEEEEECCCCCCCCCCCCEEECCCEEEEHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
EEHYRVATEVQRMLQRYKDLQDIIAILGVEELSDDDKLTVSRARKLERFFSQPFGVAEVF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
TNIPGKYVAVGDTVKSFARVLAGEFDHIPESFFFMKGGIDDVVAAYDASKQ
HCCCCCEEEECHHHHHHHHHHHHHHHCCCCHHEEECCCHHHHHHHHCCCCC
>Mature Secondary Structure 
ATGKILQITGVVIDAEFPADGLPQIYNALEIPLGEGRSSLICEVQQQLGDSVVRAVAMS
CCCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TTDGLVRGMDVIDTGAPISVPVGPETLGRVFDVQGRPIDGEGAVGTTKTMPIHRPAPTFE
CHHHHHHCCHHCCCCCCEECCCCHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
EQSNRAELFETGIKVIDLIAPFTKGGKTGVFGGAGVGKTVIIQELISNIAKEQSGYSVFA
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
GVGERSREGNDLIHEMKDSKIPGTDQTVFDKTVMVFGQMNEPPGARLRVALSALTMAEYF
CCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHH
REEGRDVLLFVDNIFRFTQAGSEVSALLGRMPSQVGYQPTLGTEMGELQERITSTKTGSI
HHCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHCCCCCCC
TSLQAVYVPADDYTDPAPATTFAHLDATISLERSISEKGIYPAVDPLASTSRILDPNIVG
EEEEEEEECCCCCCCCCCCCEEECCCEEEEHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
EEHYRVATEVQRMLQRYKDLQDIIAILGVEELSDDDKLTVSRARKLERFFSQPFGVAEVF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
TNIPGKYVAVGDTVKSFARVLAGEFDHIPESFFFMKGGIDDVVAAYDASKQ
HCCCCCEEEECHHHHHHHHHHHHHHHCCCCHHEEECCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA