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The map label for this gene is tnsD [H]

Identifier: 159900466

GI number: 159900466

Start: 4958928

End: 4960721

Strand: Direct

Name: tnsD [H]

Synonym: Haur_3953

Alternate gene names: 159900466

Gene position: 4958928-4960721 (Clockwise)

Preceding gene: 159900465

Following gene: 159900468

Centisome position: 78.14

GC content: 43.81

Gene sequence:

>1794_bases
ATGCGCTTCGCCTCAGCTAACATTGCTGTTGAAGAACTTTTTGGCACACGAAATATTGTAGCTGTTGTTGATCTTCCTAG
CCGACTAGATATTTTATCCAATCGGCTACCCAAGGCATTAGGTCTTAATTCGGAACTACTTATCAGCAATCACACGTCAT
TGCCTTTGTTTGCGCCTTTTTTATCTGGTGATGCTCTCCACAGAGTCCGACGTTCAATGCTCGGCAATAAAGGGGGAACA
GTACATTCGCGCATTGGTATTATGGCTAGTGGAGTCAAGAGCCTCAGAAAGCTGCGTTTTTGTCCAGTGTGTGTCAATGA
AGATCGGTCAAAATATGGAGAATGTTATTGGCATCGGGTTCATAATATCGCAGGAATCAATGTTTGTGCCCATCACGGAT
GCATTTTACAAGATAGCATTCTTTCATTTCAACGACAGAGCACCTATTACGCCTACAACGCAGCAGAAGATTACATACCA
GAGATAGAGTTTGCAGATCCGACTCCAGCAAATCTGCATCTCTATGCTCTTGCCAAGCAAGCCTATTGGCTCTTAAACAA
TATATCTAATGCAGATCTGAAGGATATGTATAATGTCTATCGAAGATGCCTTGATTTAAGAGGGCTTACGACGGCATCCA
ATAGCATTCGTCAGCAGCAACTTCAATCCACATTCATAGATTTCTACACGCCTGAATTGCTTGATACTATATCTTGCTCT
TTAGAAGATGTTCATCAAACATGGTTATCCCGCCTAGTTGGCGGAGATTACGTAGCACATCATCCTCTTCGTCATCTTCT
GGTACTTCATTTCTTTGGCCACACGCCGGAGAGCGCATTGAAGAGTCTTGATGAACCTACGCCCGATCCATTCGGTCACG
GCCCTTGGCCATGTCTTAATCGAGTTTGTCCACATTCACACAAAGATGTTATTGAAACATGTAATGTAAGGCGTAGTCGG
TATACCCGTGATCGGCCAATTGGGACATTTGCTTGTCCATTTTGTGGATTCAGCTATATACGGACAGGGCCGGATCAATC
TCAGAACTCGCGATATCATATTAGTAAAATCCAGGAATTTGGCTTCATATGGGAAAAGAGACTGGTTGAACTGTTCGCTC
AACAAATCCTGAGCCTACGTGCTATAAGCAAGATCTTGGGCGTTGATCCCAATACTGTCAAACGTCATGCACAACGACTT
ATGGATACTGGTGATAAAACCTTAAATAAAGACCTATCTAATACTAATGCTAGCTTAGATGCGACTGATCTTCTAATATC
ACATCGACACACATGGCTTAAAGCGATTAAAGTTTTTCCTCAATTTGGTGTATCCCAATTGAGAAAACGCTTTAGCACGG
CCTATGCTTGGCTTTACCGAAATGACAAAGCTTGGCTTTTTCTCCATACCCCAGCCAGATCTAGTCGGATTTTCCGTACG
AATCGAGTATCATGGCCAGCCCGGGACAAATTGCTACTACAAGCGGTGCAAGAGGCAGCAACCAGAATTTTAAACCAGGA
ACAATGGCCTAAACAAATGACCTTAGGTGCTATTGGAAGAGAGGCAGCGTGTCTCCCGATCCTACAGCGACATTTAGATA
AGCTGCCGAAAACGGCAGATCGTCTGAAAGATTTGGTGGAAACGAGAGAGGCGTGGGCTGTAAGGCGGCTCCAATGGACT
ATTAACCAAGCACAAAATCAAGGACTCATTCTCAAGGGCTGGGAAATTGTTCAACGCTCAGGCTTAGGACGTTTCCCCAA
GAAATGGTTTGAACATCATGGTATACAGTTTTAA

Upstream 100 bases:

>100_bases
TTTTAGCGAGGTATACCGCACATATGCGCTTCGCCTCAGCTAACATTTACCCTATCCGGATGAACTACTCTATAGCATTT
TAGCGAGGTATACCACACAT

Downstream 100 bases:

>100_bases
ATCTTCAAAGTGCTAGACGGCATGTTCAGGTAATCTTATTGGCAATGTCTATGTTCATCTGCTAGTAAGATTACCTGAAC
ACATTAGTTCACCATCACGA

Product: Tn7-like transposition protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 597; Mature: 597

Protein sequence:

>597_residues
MRFASANIAVEELFGTRNIVAVVDLPSRLDILSNRLPKALGLNSELLISNHTSLPLFAPFLSGDALHRVRRSMLGNKGGT
VHSRIGIMASGVKSLRKLRFCPVCVNEDRSKYGECYWHRVHNIAGINVCAHHGCILQDSILSFQRQSTYYAYNAAEDYIP
EIEFADPTPANLHLYALAKQAYWLLNNISNADLKDMYNVYRRCLDLRGLTTASNSIRQQQLQSTFIDFYTPELLDTISCS
LEDVHQTWLSRLVGGDYVAHHPLRHLLVLHFFGHTPESALKSLDEPTPDPFGHGPWPCLNRVCPHSHKDVIETCNVRRSR
YTRDRPIGTFACPFCGFSYIRTGPDQSQNSRYHISKIQEFGFIWEKRLVELFAQQILSLRAISKILGVDPNTVKRHAQRL
MDTGDKTLNKDLSNTNASLDATDLLISHRHTWLKAIKVFPQFGVSQLRKRFSTAYAWLYRNDKAWLFLHTPARSSRIFRT
NRVSWPARDKLLLQAVQEAATRILNQEQWPKQMTLGAIGREAACLPILQRHLDKLPKTADRLKDLVETREAWAVRRLQWT
INQAQNQGLILKGWEIVQRSGLGRFPKKWFEHHGIQF

Sequences:

>Translated_597_residues
MRFASANIAVEELFGTRNIVAVVDLPSRLDILSNRLPKALGLNSELLISNHTSLPLFAPFLSGDALHRVRRSMLGNKGGT
VHSRIGIMASGVKSLRKLRFCPVCVNEDRSKYGECYWHRVHNIAGINVCAHHGCILQDSILSFQRQSTYYAYNAAEDYIP
EIEFADPTPANLHLYALAKQAYWLLNNISNADLKDMYNVYRRCLDLRGLTTASNSIRQQQLQSTFIDFYTPELLDTISCS
LEDVHQTWLSRLVGGDYVAHHPLRHLLVLHFFGHTPESALKSLDEPTPDPFGHGPWPCLNRVCPHSHKDVIETCNVRRSR
YTRDRPIGTFACPFCGFSYIRTGPDQSQNSRYHISKIQEFGFIWEKRLVELFAQQILSLRAISKILGVDPNTVKRHAQRL
MDTGDKTLNKDLSNTNASLDATDLLISHRHTWLKAIKVFPQFGVSQLRKRFSTAYAWLYRNDKAWLFLHTPARSSRIFRT
NRVSWPARDKLLLQAVQEAATRILNQEQWPKQMTLGAIGREAACLPILQRHLDKLPKTADRLKDLVETREAWAVRRLQWT
INQAQNQGLILKGWEIVQRSGLGRFPKKWFEHHGIQF
>Mature_597_residues
MRFASANIAVEELFGTRNIVAVVDLPSRLDILSNRLPKALGLNSELLISNHTSLPLFAPFLSGDALHRVRRSMLGNKGGT
VHSRIGIMASGVKSLRKLRFCPVCVNEDRSKYGECYWHRVHNIAGINVCAHHGCILQDSILSFQRQSTYYAYNAAEDYIP
EIEFADPTPANLHLYALAKQAYWLLNNISNADLKDMYNVYRRCLDLRGLTTASNSIRQQQLQSTFIDFYTPELLDTISCS
LEDVHQTWLSRLVGGDYVAHHPLRHLLVLHFFGHTPESALKSLDEPTPDPFGHGPWPCLNRVCPHSHKDVIETCNVRRSR
YTRDRPIGTFACPFCGFSYIRTGPDQSQNSRYHISKIQEFGFIWEKRLVELFAQQILSLRAISKILGVDPNTVKRHAQRL
MDTGDKTLNKDLSNTNASLDATDLLISHRHTWLKAIKVFPQFGVSQLRKRFSTAYAWLYRNDKAWLFLHTPARSSRIFRT
NRVSWPARDKLLLQAVQEAATRILNQEQWPKQMTLGAIGREAACLPILQRHLDKLPKTADRLKDLVETREAWAVRRLQWT
INQAQNQGLILKGWEIVQRSGLGRFPKKWFEHHGIQF

Specific function: TnsABC + tnsD promote high-frequency insertion of Tn7 into a specific target site known as att-Tn7 whereas tnsABC + tnsE promote low-frequency insertion into many different sites [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68419; Mature: 68419

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFASANIAVEELFGTRNIVAVVDLPSRLDILSNRLPKALGLNSELLISNHTSLPLFAPF
CCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHCCCHHHCCCCCEEEECCCCCCEEHHH
LSGDALHRVRRSMLGNKGGTVHSRIGIMASGVKSLRKLRFCPVCVNEDRSKYGECYWHRV
HCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHH
HNIAGINVCAHHGCILQDSILSFQRQSTYYAYNAAEDYIPEIEFADPTPANLHLYALAKQ
HCCCCCHHHHHCCCHHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCCCCEEEEHHHHH
AYWLLNNISNADLKDMYNVYRRCLDLRGLTTASNSIRQQQLQSTFIDFYTPELLDTISCS
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
LEDVHQTWLSRLVGGDYVAHHPLRHLLVLHFFGHTPESALKSLDEPTPDPFGHGPWPCLN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHH
RVCPHSHKDVIETCNVRRSRYTRDRPIGTFACPFCGFSYIRTGPDQSQNSRYHISKIQEF
HCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECHHHCHHHHCCCCCCCCCCCHHHHHHHHH
GFIWEKRLVELFAQQILSLRAISKILGVDPNTVKRHAQRLMDTGDKTLNKDLSNTNASLD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCH
ATDLLISHRHTWLKAIKVFPQFGVSQLRKRFSTAYAWLYRNDKAWLFLHTPARSSRIFRT
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCEEEE
NRVSWPARDKLLLQAVQEAATRILNQEQWPKQMTLGAIGREAACLPILQRHLDKLPKTAD
CCCCCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHH
RLKDLVETREAWAVRRLQWTINQAQNQGLILKGWEIVQRSGLGRFPKKWFEHHGIQF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MRFASANIAVEELFGTRNIVAVVDLPSRLDILSNRLPKALGLNSELLISNHTSLPLFAPF
CCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHCCCHHHCCCCCEEEECCCCCCEEHHH
LSGDALHRVRRSMLGNKGGTVHSRIGIMASGVKSLRKLRFCPVCVNEDRSKYGECYWHRV
HCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHH
HNIAGINVCAHHGCILQDSILSFQRQSTYYAYNAAEDYIPEIEFADPTPANLHLYALAKQ
HCCCCCHHHHHCCCHHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCCCCEEEEHHHHH
AYWLLNNISNADLKDMYNVYRRCLDLRGLTTASNSIRQQQLQSTFIDFYTPELLDTISCS
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
LEDVHQTWLSRLVGGDYVAHHPLRHLLVLHFFGHTPESALKSLDEPTPDPFGHGPWPCLN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHH
RVCPHSHKDVIETCNVRRSRYTRDRPIGTFACPFCGFSYIRTGPDQSQNSRYHISKIQEF
HCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECHHHCHHHHCCCCCCCCCCCHHHHHHHHH
GFIWEKRLVELFAQQILSLRAISKILGVDPNTVKRHAQRLMDTGDKTLNKDLSNTNASLD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCH
ATDLLISHRHTWLKAIKVFPQFGVSQLRKRFSTAYAWLYRNDKAWLFLHTPARSSRIFRT
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCEEEE
NRVSWPARDKLLLQAVQEAATRILNQEQWPKQMTLGAIGREAACLPILQRHLDKLPKTAD
CCCCCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHH
RLKDLVETREAWAVRRLQWTINQAQNQGLILKGWEIVQRSGLGRFPKKWFEHHGIQF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2156235; 1655576 [H]