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The map label for this gene is tnsC [H]

Identifier: 159900465

GI number: 159900465

Start: 4957277

End: 4958779

Strand: Direct

Name: tnsC [H]

Synonym: Haur_3952

Alternate gene names: 159900465

Gene position: 4957277-4958779 (Clockwise)

Preceding gene: 159900464

Following gene: 159900466

Centisome position: 78.11

GC content: 39.92

Gene sequence:

>1503_bases
ATGAATAAGATCTATCATAATCCTTTTGGATGGAGTGGAGATGAAGAAGATGCTATTTATCATGAACAAATCCTGCCGAT
GTATCAGGATAATCCCTTGATCGAAGCCTTACCACCAATCCGGCCTTCAGTTGAAGTATTCCGTAATCTTACCAAATTTC
CACCAATGAAGTCAGAATATCGGTTGTTCCCAGCGGAAGAACGTTTGCACTTGATCAGATGCATCGATCAGTTTTTTCAG
CCATTGCCACGACATGGACGCTTATTTAGCGATATATGTGGAATGATTTATAAAGGGTATATTGCTAGAAACCCTCTTTC
AAAAGGATTTTGGAAAACACTAGATGGTAATGTTGATAAGCTCGTTGTCAACTTACGACAGAAAAATCATATCGCATATA
GAAAAAGTGCGACAACGATGAGCCTCATTGGAATCAGTGGTATTGGTAAATCTCGTAGTCTAGAAGAAGTCCTTAGCTTG
TTCCCTCAAATAATTAATCACCATACCTATCGCGGAGTACCATTTCCTTGGAAACAGCTTGTGTGGTTAAAGTTGGAATG
CCCCCATAATGGTTCAACTCGTTCCCTCGGACTAGCTTTTTTTGAACAAATAGACTGGATTCTTGGAACAAACTATATGC
ATGGTTATGCACGTAATGGCCGAGCTACAGAGATGGAGTTGTTGAAGAATATGGCCAGAGTTGGGGCGATTCATTCATTA
GGTGTATTAGTGATTGATGAAATCCAAGCCCTTAGTCAAGCCAAAAGTGGTGGAGCTGAGGAGATGCTTAATTTTTTTGT
AGAGTTAGTTAATACTCTCGGCCTGCCAATTATCTTAATAGGCACATATAAGGCACAAAAACTATTCAGTCAAGCCTTCC
GCCAAGCTCGACGAGCCAATTCCTATGGTGGGGATTCGTGGGATCGGATGAAAGTTGATGAAGATTGGAAACTATTTTTA
GAAACCCTTTGGCAATTTCAATATACAAAACACCCAGTTAAGCTCACGGATCGGCTTGCCGAGACCTTGTACGATCTATC
CCAAGGTATCACTGATATTGCAATCAAAGTATTCATTCTTGGGCAAACACTAGCCATTAGAACTGGTGAAGAAAGGCTGT
CACCAGAATTGCTTATCACAGCATCAGAAAGAGCGCTATCGATGGTACAACCATTCCTAACAGCGCTGAGAACAAATAAT
ATGGATCAATTTATGCTGATGGAAGATATTCAACCAATTAATCTAGAAATAGCACTCAATGACCTCAATTCAATTTATAC
CAATCAACAATCCTTGGAGCCTCATCTTGATAGTAATGAATCCCTATCTAAGAGGGCATTAGGAATCGATTTAGCAATTG
ATAGCTCGTCAGTTGATGCCTATGATCAACTCAAGCAACAAAATCTTATTAGTGATATATCCAGCGATCTTAGCTTTCTC
TCTAGAAATGGGAAGGAGGAGTCAAATGAGGCATCAACTGAAAAAGAGGAGTCAGAAAAATGA

Upstream 100 bases:

>100_bases
GTTACCCCCATCCAAAAACCTCCACGAACAAGGTTTACAGAGTCCAGTAGCGATTATGCATTTATCCGCTCAGTCAGGGA
AGATGTACGCGAGGCAAACA

Downstream 100 bases:

>100_bases
TGCTTACTCAATTTCCTATACCCTATCCGGATGAACTACTCTATAGCATTTTAGCGAGGTATACCGCACATATGCGCTTC
GCCTCAGCTAACATTTACCC

Product: Tn7-like transposition protein C

Products: NA

Alternate protein names: Protein E [H]

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MNKIYHNPFGWSGDEEDAIYHEQILPMYQDNPLIEALPPIRPSVEVFRNLTKFPPMKSEYRLFPAEERLHLIRCIDQFFQ
PLPRHGRLFSDICGMIYKGYIARNPLSKGFWKTLDGNVDKLVVNLRQKNHIAYRKSATTMSLIGISGIGKSRSLEEVLSL
FPQIINHHTYRGVPFPWKQLVWLKLECPHNGSTRSLGLAFFEQIDWILGTNYMHGYARNGRATEMELLKNMARVGAIHSL
GVLVIDEIQALSQAKSGGAEEMLNFFVELVNTLGLPIILIGTYKAQKLFSQAFRQARRANSYGGDSWDRMKVDEDWKLFL
ETLWQFQYTKHPVKLTDRLAETLYDLSQGITDIAIKVFILGQTLAIRTGEERLSPELLITASERALSMVQPFLTALRTNN
MDQFMLMEDIQPINLEIALNDLNSIYTNQQSLEPHLDSNESLSKRALGIDLAIDSSSVDAYDQLKQQNLISDISSDLSFL
SRNGKEESNEASTEKEESEK

Sequences:

>Translated_500_residues
MNKIYHNPFGWSGDEEDAIYHEQILPMYQDNPLIEALPPIRPSVEVFRNLTKFPPMKSEYRLFPAEERLHLIRCIDQFFQ
PLPRHGRLFSDICGMIYKGYIARNPLSKGFWKTLDGNVDKLVVNLRQKNHIAYRKSATTMSLIGISGIGKSRSLEEVLSL
FPQIINHHTYRGVPFPWKQLVWLKLECPHNGSTRSLGLAFFEQIDWILGTNYMHGYARNGRATEMELLKNMARVGAIHSL
GVLVIDEIQALSQAKSGGAEEMLNFFVELVNTLGLPIILIGTYKAQKLFSQAFRQARRANSYGGDSWDRMKVDEDWKLFL
ETLWQFQYTKHPVKLTDRLAETLYDLSQGITDIAIKVFILGQTLAIRTGEERLSPELLITASERALSMVQPFLTALRTNN
MDQFMLMEDIQPINLEIALNDLNSIYTNQQSLEPHLDSNESLSKRALGIDLAIDSSSVDAYDQLKQQNLISDISSDLSFL
SRNGKEESNEASTEKEESEK
>Mature_500_residues
MNKIYHNPFGWSGDEEDAIYHEQILPMYQDNPLIEALPPIRPSVEVFRNLTKFPPMKSEYRLFPAEERLHLIRCIDQFFQ
PLPRHGRLFSDICGMIYKGYIARNPLSKGFWKTLDGNVDKLVVNLRQKNHIAYRKSATTMSLIGISGIGKSRSLEEVLSL
FPQIINHHTYRGVPFPWKQLVWLKLECPHNGSTRSLGLAFFEQIDWILGTNYMHGYARNGRATEMELLKNMARVGAIHSL
GVLVIDEIQALSQAKSGGAEEMLNFFVELVNTLGLPIILIGTYKAQKLFSQAFRQARRANSYGGDSWDRMKVDEDWKLFL
ETLWQFQYTKHPVKLTDRLAETLYDLSQGITDIAIKVFILGQTLAIRTGEERLSPELLITASERALSMVQPFLTALRTNN
MDQFMLMEDIQPINLEIALNDLNSIYTNQQSLEPHLDSNESLSKRALGIDLAIDSSSVDAYDQLKQQNLISDISSDLSFL
SRNGKEESNEASTEKEESEK

Specific function: TnsABC + tnsD promote high-frequency insertion of Tn7 into a specific target site known as att-Tn7 whereas tnsABC + tnsE promote low-frequency insertion into many different sites [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021542 [H]

Pfam domain/function: PF00004 AAA; PF11426 Tn7_TnsC [H]

EC number: NA

Molecular weight: Translated: 57082; Mature: 57082

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS00037 MYB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIYHNPFGWSGDEEDAIYHEQILPMYQDNPLIEALPPIRPSVEVFRNLTKFPPMKSEY
CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCCC
RLFPAEERLHLIRCIDQFFQPLPRHGRLFSDICGMIYKGYIARNPLSKGFWKTLDGNVDK
EECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHH
LVVNLRQKNHIAYRKSATTMSLIGISGIGKSRSLEEVLSLFPQIINHHTYRGVPFPWKQL
HHHHHHHHCCEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCE
VWLKLECPHNGSTRSLGLAFFEQIDWILGTNYMHGYARNGRATEMELLKNMARVGAIHSL
EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
GVLVIDEIQALSQAKSGGAEEMLNFFVELVNTLGLPIILIGTYKAQKLFSQAFRQARRAN
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHCC
SYGGDSWDRMKVDEDWKLFLETLWQFQYTKHPVKLTDRLAETLYDLSQGITDIAIKVFIL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHEE
GQTLAIRTGEERLSPELLITASERALSMVQPFLTALRTNNMDQFMLMEDIQPINLEIALN
CCEEEEECCHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEC
DLNSIYTNQQSLEPHLDSNESLSKRALGIDLAIDSSSVDAYDQLKQQNLISDISSDLSFL
HHHHHHCCCHHCCCCCCCCCCHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
SRNGKEESNEASTEKEESEK
HHCCCCCCCHHCCCHHHCCC
>Mature Secondary Structure
MNKIYHNPFGWSGDEEDAIYHEQILPMYQDNPLIEALPPIRPSVEVFRNLTKFPPMKSEY
CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCCC
RLFPAEERLHLIRCIDQFFQPLPRHGRLFSDICGMIYKGYIARNPLSKGFWKTLDGNVDK
EECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHH
LVVNLRQKNHIAYRKSATTMSLIGISGIGKSRSLEEVLSLFPQIINHHTYRGVPFPWKQL
HHHHHHHHCCEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCE
VWLKLECPHNGSTRSLGLAFFEQIDWILGTNYMHGYARNGRATEMELLKNMARVGAIHSL
EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
GVLVIDEIQALSQAKSGGAEEMLNFFVELVNTLGLPIILIGTYKAQKLFSQAFRQARRAN
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHCC
SYGGDSWDRMKVDEDWKLFLETLWQFQYTKHPVKLTDRLAETLYDLSQGITDIAIKVFIL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHEE
GQTLAIRTGEERLSPELLITASERALSMVQPFLTALRTNNMDQFMLMEDIQPINLEIALN
CCEEEEECCHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEC
DLNSIYTNQQSLEPHLDSNESLSKRALGIDLAIDSSSVDAYDQLKQQNLISDISSDLSFL
HHHHHHCCCHHCCCCCCCCCCHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
SRNGKEESNEASTEKEESEK
HHCCCCCCCHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2156235; 3022239; 1655576; 1317955 [H]