| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900455
Identifier: 159900455
GI number: 159900455
Start: 4936064
End: 4937608
Strand: Direct
Name: 159900455
Synonym: Haur_3940
Alternate gene names: NA
Gene position: 4936064-4937608 (Clockwise)
Preceding gene: 159900454
Following gene: 159900463
Centisome position: 77.78
GC content: 54.56
Gene sequence:
>1545_bases ATGCCGATGCCGCCGTTGTGGCATCTCTCCCTGAATCGTAGCAGCGTTGCTACCACCAAGCTGCATTCCCAGATGCCCAG TTTTGCATCCACCGCGTACCTCCGGAGGTTTCTGTTGCGACACATTGCCCGTTTCTTGGCGCTTGGTTGTCTGCTCGCCG TGAGCATGACCCCCATCCGAGCGCAGGCGAACCCAACCTTGTGGGCTGCTGCTGCATCAACCGACACCCTCGTTCTTGCT TCTGGTCAACTGACCCTCGCCCCGAATGCGGCCCAAGCGGCTGCGGTCTATGGCTCATACGCTCGTTTTGGAATGTTCGA TAGTGCTCCGCAAAACATCGCTCCCGCCAATCAAGTGCTGGTTACATGGGGCGCAACTGTGCCCGCTGCCGCTAGCGTGC GCGTCGATGTGCGTGGCTTCAATGGCCAACGCTGGAGCGATTGGACGCTTGATGTGCAATCGGGCCAAACGGTAGCTTTT GCCACCATCGCCCGCCAAATTCAATATCGTTTGGTGCTATTGGCCAACGAGGCTGCGCCAGTCGTTGATTTTGTGCAACT TGCGCCCAACACGCTTGCCGAAAGCGATGCCATCAGCATTATGGAAGATGAGCCGATTGCTCCAACCTACCATATTCGGG CTACCCGGATGGGCTTGGTTGGCGATCGCACGGCCAACGGCCATATCATTCAGCCAAACGATTGGTTTGTTTCATTGCCA TCGTTCCGCTCACTCTCATCGCGTGGCGGCGGCGAATACATGGCGCGGCTTTCCTATCGTGGCAAATCGATTGTTGTGCC AGTTTGGGAAGTTGGGCCATGGAACATTCACGATGATTATTGGAATGTTGAGCGCGAGAAATTTGGCGATTTGCCTGTCG GCTGGCCCCAAGATCACGCTGCCTATTTCGATGGCTACAATGGTGGCTGGGCTGAAAAAGGCCGCGTGCGATTCCCCACC GCTGCTGATGTCGGCGATGGCGCATGGGTCGCCTTGGGCATTCCATTTAACGATGAACAAGAAGAACTTGATATTACCTT CTTGTGGCTAGGCCGTGATCCTGGCGATAACCCCGACCCAATGCCAGTTGGCAGTGTTACGCCTGAGCCAGCCCCAATTG AAGAATTACCAGCGGGCACGATTCAGGTCGATAATCAAGGCGAACAATTCAGCCGCTCCGATGTGGCATGGTTTGAATTT TCGTGTGGTAAAAATCGCCATTCGTTCTGGACCTTCTCAACCAACAAGCCTGAAGAAGCAGTCAATAATGCGCGTTGGAC AACTCCGCTTGAGGCTGGTGACTATAGCGTGACCGTGTTTGTGCCCTACTGCCCCAATGGCAAGAGCGATACAACTTCAG CACGTTATGTTGTGCAACATGCCGATGGCGAAACTCAAGTTGTCGTCAATCAAGCGGAACATGCTGGCAACTGGGTTGAG CTAGGCCGCTATCGCTTTGATGGTACTGGCACAGTTAGCCTCAGCGATTTGGCCGACGACCGCATGAAAGCCATTTGGTT TGATAGCGTGCGCTGGACAAAATAA
Upstream 100 bases:
>100_bases CTATGATATAATCCTCACGCTGTGTTAAATGCTGGAAAATCAGCTTTTAGCGCTGTCCTCACGCCACGAAGGCGGGTTGT ATCAAGAGAGTCGGTGTGGA
Downstream 100 bases:
>100_bases GTTCAATTCAATTATTTAGCGATCAAAGAAGCAGGGCTTGGAATTATCCAAGCCCTGCTTCTTAGTTATCCATTATTCAG CTTATGGTTGCGGTGGCGTA
Product: hypothetical protein
Products: NA
Alternate protein names: N-Acetylmuramoyl-L-Alanine Amidase; Peptidase
Number of amino acids: Translated: 514; Mature: 513
Protein sequence:
>514_residues MPMPPLWHLSLNRSSVATTKLHSQMPSFASTAYLRRFLLRHIARFLALGCLLAVSMTPIRAQANPTLWAAAASTDTLVLA SGQLTLAPNAAQAAAVYGSYARFGMFDSAPQNIAPANQVLVTWGATVPAAASVRVDVRGFNGQRWSDWTLDVQSGQTVAF ATIARQIQYRLVLLANEAAPVVDFVQLAPNTLAESDAISIMEDEPIAPTYHIRATRMGLVGDRTANGHIIQPNDWFVSLP SFRSLSSRGGGEYMARLSYRGKSIVVPVWEVGPWNIHDDYWNVEREKFGDLPVGWPQDHAAYFDGYNGGWAEKGRVRFPT AADVGDGAWVALGIPFNDEQEELDITFLWLGRDPGDNPDPMPVGSVTPEPAPIEELPAGTIQVDNQGEQFSRSDVAWFEF SCGKNRHSFWTFSTNKPEEAVNNARWTTPLEAGDYSVTVFVPYCPNGKSDTTSARYVVQHADGETQVVVNQAEHAGNWVE LGRYRFDGTGTVSLSDLADDRMKAIWFDSVRWTK
Sequences:
>Translated_514_residues MPMPPLWHLSLNRSSVATTKLHSQMPSFASTAYLRRFLLRHIARFLALGCLLAVSMTPIRAQANPTLWAAAASTDTLVLA SGQLTLAPNAAQAAAVYGSYARFGMFDSAPQNIAPANQVLVTWGATVPAAASVRVDVRGFNGQRWSDWTLDVQSGQTVAF ATIARQIQYRLVLLANEAAPVVDFVQLAPNTLAESDAISIMEDEPIAPTYHIRATRMGLVGDRTANGHIIQPNDWFVSLP SFRSLSSRGGGEYMARLSYRGKSIVVPVWEVGPWNIHDDYWNVEREKFGDLPVGWPQDHAAYFDGYNGGWAEKGRVRFPT AADVGDGAWVALGIPFNDEQEELDITFLWLGRDPGDNPDPMPVGSVTPEPAPIEELPAGTIQVDNQGEQFSRSDVAWFEF SCGKNRHSFWTFSTNKPEEAVNNARWTTPLEAGDYSVTVFVPYCPNGKSDTTSARYVVQHADGETQVVVNQAEHAGNWVE LGRYRFDGTGTVSLSDLADDRMKAIWFDSVRWTK >Mature_513_residues PMPPLWHLSLNRSSVATTKLHSQMPSFASTAYLRRFLLRHIARFLALGCLLAVSMTPIRAQANPTLWAAAASTDTLVLAS GQLTLAPNAAQAAAVYGSYARFGMFDSAPQNIAPANQVLVTWGATVPAAASVRVDVRGFNGQRWSDWTLDVQSGQTVAFA TIARQIQYRLVLLANEAAPVVDFVQLAPNTLAESDAISIMEDEPIAPTYHIRATRMGLVGDRTANGHIIQPNDWFVSLPS FRSLSSRGGGEYMARLSYRGKSIVVPVWEVGPWNIHDDYWNVEREKFGDLPVGWPQDHAAYFDGYNGGWAEKGRVRFPTA ADVGDGAWVALGIPFNDEQEELDITFLWLGRDPGDNPDPMPVGSVTPEPAPIEELPAGTIQVDNQGEQFSRSDVAWFEFS CGKNRHSFWTFSTNKPEEAVNNARWTTPLEAGDYSVTVFVPYCPNGKSDTTSARYVVQHADGETQVVVNQAEHAGNWVEL GRYRFDGTGTVSLSDLADDRMKAIWFDSVRWTK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56615; Mature: 56484
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMPPLWHLSLNRSSVATTKLHSQMPSFASTAYLRRFLLRHIARFLALGCLLAVSMTPIR CCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE AQANPTLWAAAASTDTLVLASGQLTLAPNAAQAAAVYGSYARFGMFDSAPQNIAPANQVL ECCCCCEEEEECCCCEEEEECCEEEECCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCEEE VTWGATVPAAASVRVDVRGFNGQRWSDWTLDVQSGQTVAFATIARQIQYRLVLLANEAAP EEECCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEHHHHHHHHEEEEEEEECCCCC VVDFVQLAPNTLAESDAISIMEDEPIAPTYHIRATRMGLVGDRTANGHIIQPNDWFVSLP HHHHHHHCCCHHCCCCCEEEECCCCCCCEEEEEEEEECEECCCCCCCCEECCCCCEEECC SFRSLSSRGGGEYMARLSYRGKSIVVPVWEVGPWNIHDDYWNVEREKFGDLPVGWPQDHA CHHHHHCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCH AYFDGYNGGWAEKGRVRFPTAADVGDGAWVALGIPFNDEQEELDITFLWLGRDPGDNPDP HEECCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCC MPVGSVTPEPAPIEELPAGTIQVDNQGEQFSRSDVAWFEFSCGKNRHSFWTFSTNKPEEA CCCCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHH VNNARWTTPLEAGDYSVTVFVPYCPNGKSDTTSARYVVQHADGETQVVVNQAEHAGNWVE HCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECHHHCCCEEE LGRYRFDGTGTVSLSDLADDRMKAIWFDSVRWTK ECCEEECCCCEEEHHHHCCCCEEEEEECCEECCC >Mature Secondary Structure PMPPLWHLSLNRSSVATTKLHSQMPSFASTAYLRRFLLRHIARFLALGCLLAVSMTPIR CCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE AQANPTLWAAAASTDTLVLASGQLTLAPNAAQAAAVYGSYARFGMFDSAPQNIAPANQVL ECCCCCEEEEECCCCEEEEECCEEEECCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCEEE VTWGATVPAAASVRVDVRGFNGQRWSDWTLDVQSGQTVAFATIARQIQYRLVLLANEAAP EEECCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCEEEHHHHHHHHEEEEEEEECCCCC VVDFVQLAPNTLAESDAISIMEDEPIAPTYHIRATRMGLVGDRTANGHIIQPNDWFVSLP HHHHHHHCCCHHCCCCCEEEECCCCCCCEEEEEEEEECEECCCCCCCCEECCCCCEEECC SFRSLSSRGGGEYMARLSYRGKSIVVPVWEVGPWNIHDDYWNVEREKFGDLPVGWPQDHA CHHHHHCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCH AYFDGYNGGWAEKGRVRFPTAADVGDGAWVALGIPFNDEQEELDITFLWLGRDPGDNPDP HEECCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCC MPVGSVTPEPAPIEELPAGTIQVDNQGEQFSRSDVAWFEFSCGKNRHSFWTFSTNKPEEA CCCCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHH VNNARWTTPLEAGDYSVTVFVPYCPNGKSDTTSARYVVQHADGETQVVVNQAEHAGNWVE HCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECHHHCCCEEE LGRYRFDGTGTVSLSDLADDRMKAIWFDSVRWTK ECCEEECCCCEEEHHHHCCCCEEEEEECCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA