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The map label for this gene is rbn [C]

Identifier: 159900436

GI number: 159900436

Start: 4913860

End: 4914942

Strand: Reverse

Name: rbn [C]

Synonym: Haur_3921

Alternate gene names: 159900436

Gene position: 4914942-4913860 (Counterclockwise)

Preceding gene: 159900441

Following gene: 159900435

Centisome position: 77.44

GC content: 47.83

Gene sequence:

>1083_bases
ATGCAGCCAAGTATTATTAATTTATTTAAACAAACATTTAAAGAGTGGGGCGATGACAAAGTGCCACGGCTTGGGGCTGC
CTTGGCCTATTACACGGTATTTTCGCTTGCGCCACTGTTAATTATTGCAATTAGCATTGCTGGCTTGGTGTTTGATCAAG
AGGCCGCTCGCGGTGAGGTTACCCGTCAATTAGCCACGTTAATTAATGACGATGCGGCCCAAGCGATCAACGAAATTATT
CAGCAATCGAGTAACCAGCGCTCAGGCATTATCGGCACATTAATTGGTGTGGCAACCTTGCTCTTTGGTGCTTCCGGCGT
TTTTGGTCAGCTCAAAGATGCCATGAACACGATTTGGGGGGTGCAACCAAAGCCTAGGCGCGGGATTTGGGGCATCGTCC
AGGAGCGCTTTTTCTCGTTTACGATGGTGCTGGGCGTGGGCTTTTTGCTCTTAGTTTCGCTGATTATCAGCACATTGCTT
GAGGCTGGCAAAAATTGGCTGTTTGGCGCAGAGATTGGCATTGTGTTTCAGATTATCAATTTAATCGTTTCATTTGGCAT
TATCACCGTCGTTTTTGCCCTGTTGTTCAAATTTTTGCCTGATGTTAAGATGGCTTGGCGTGATGTTTGGATTGGTGCAG
CACTCACGGCATTGCTCTTCACCATCGGTAAATTTGCGATTGGTCAATATCTGAGTACCAGCAGCACCGCCTCGACGTTT
GGCGCGGCTGGCTCATTGATTATTGTGCTGTTGTGGGTCTATTATTCGAGCCAAATTCTCTTTTTTGGAGCTGAATTGAC
CCAAGTCTATGCCAATATGTATGGCTCACACGTGCAACCCGATGATGATGCTGTAGCCGTGACTGCCGCTGCTCGGGCTG
AACAAGGCCTGAGTAATCCTCATTCGCCGCGTGATCAGCGCACGCCGCGACCGAAATTGGCCGCCAGCAAACCACAAATT
ATTGTCACTGAACGCTTTAAATCATTGGAAAAACAACGCTATCTAGCAGCAGTTTTGGGCTTTCTGCTGGCAGTGGTCGC
AGGGGCATTCAAGAGTTTACGCAACGATAAATCGCCATCTTAA

Upstream 100 bases:

>100_bases
TCTTGTAAGCTGCCCCTTTTCCTCTAGCCCCATTCGTGGTATACGAGTTGCAATTGCTTGGTTGAGCACGAATTAACCAA
TCCATCAGCAGGGGGCAGCT

Downstream 100 bases:

>100_bases
TATGAGCGAGATCGGCACAAAACAGCGGGGCGTTGGCTCCGCTTATTTATTTTAGGTTTATGTGGGAATGTTGGGGGGCT
TATCTGATTTCATGATACCA

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MQPSIINLFKQTFKEWGDDKVPRLGAALAYYTVFSLAPLLIIAISIAGLVFDQEAARGEVTRQLATLINDDAAQAINEII
QQSSNQRSGIIGTLIGVATLLFGASGVFGQLKDAMNTIWGVQPKPRRGIWGIVQERFFSFTMVLGVGFLLLVSLIISTLL
EAGKNWLFGAEIGIVFQIINLIVSFGIITVVFALLFKFLPDVKMAWRDVWIGAALTALLFTIGKFAIGQYLSTSSTASTF
GAAGSLIIVLLWVYYSSQILFFGAELTQVYANMYGSHVQPDDDAVAVTAAARAEQGLSNPHSPRDQRTPRPKLAASKPQI
IVTERFKSLEKQRYLAAVLGFLLAVVAGAFKSLRNDKSPS

Sequences:

>Translated_360_residues
MQPSIINLFKQTFKEWGDDKVPRLGAALAYYTVFSLAPLLIIAISIAGLVFDQEAARGEVTRQLATLINDDAAQAINEII
QQSSNQRSGIIGTLIGVATLLFGASGVFGQLKDAMNTIWGVQPKPRRGIWGIVQERFFSFTMVLGVGFLLLVSLIISTLL
EAGKNWLFGAEIGIVFQIINLIVSFGIITVVFALLFKFLPDVKMAWRDVWIGAALTALLFTIGKFAIGQYLSTSSTASTF
GAAGSLIIVLLWVYYSSQILFFGAELTQVYANMYGSHVQPDDDAVAVTAAARAEQGLSNPHSPRDQRTPRPKLAASKPQI
IVTERFKSLEKQRYLAAVLGFLLAVVAGAFKSLRNDKSPS
>Mature_360_residues
MQPSIINLFKQTFKEWGDDKVPRLGAALAYYTVFSLAPLLIIAISIAGLVFDQEAARGEVTRQLATLINDDAAQAINEII
QQSSNQRSGIIGTLIGVATLLFGASGVFGQLKDAMNTIWGVQPKPRRGIWGIVQERFFSFTMVLGVGFLLLVSLIISTLL
EAGKNWLFGAEIGIVFQIINLIVSFGIITVVFALLFKFLPDVKMAWRDVWIGAALTALLFTIGKFAIGQYLSTSSTASTF
GAAGSLIIVLLWVYYSSQILFFGAELTQVYANMYGSHVQPDDDAVAVTAAARAEQGLSNPHSPRDQRTPRPKLAASKPQI
IVTERFKSLEKQRYLAAVLGFLLAVVAGAFKSLRNDKSPS

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=275, Percent_Identity=27.6363636363636, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 39155; Mature: 39155

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPSIINLFKQTFKEWGDDKVPRLGAALAYYTVFSLAPLLIIAISIAGLVFDQEAARGEV
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRQLATLINDDAAQAINEIIQQSSNQRSGIIGTLIGVATLLFGASGVFGQLKDAMNTIWG
HHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
VQPKPRRGIWGIVQERFFSFTMVLGVGFLLLVSLIISTLLEAGKNWLFGAEIGIVFQIIN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LIVSFGIITVVFALLFKFLPDVKMAWRDVWIGAALTALLFTIGKFAIGQYLSTSSTASTF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
GAAGSLIIVLLWVYYSSQILFFGAELTQVYANMYGSHVQPDDDAVAVTAAARAEQGLSNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
HSPRDQRTPRPKLAASKPQIIVTERFKSLEKQRYLAAVLGFLLAVVAGAFKSLRNDKSPS
CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQPSIINLFKQTFKEWGDDKVPRLGAALAYYTVFSLAPLLIIAISIAGLVFDQEAARGEV
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRQLATLINDDAAQAINEIIQQSSNQRSGIIGTLIGVATLLFGASGVFGQLKDAMNTIWG
HHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
VQPKPRRGIWGIVQERFFSFTMVLGVGFLLLVSLIISTLLEAGKNWLFGAEIGIVFQIIN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LIVSFGIITVVFALLFKFLPDVKMAWRDVWIGAALTALLFTIGKFAIGQYLSTSSTASTF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
GAAGSLIIVLLWVYYSSQILFFGAELTQVYANMYGSHVQPDDDAVAVTAAARAEQGLSNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
HSPRDQRTPRPKLAASKPQIIVTERFKSLEKQRYLAAVLGFLLAVVAGAFKSLRNDKSPS
CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA