| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900441
Identifier: 159900441
GI number: 159900441
Start: 4919015
End: 4921951
Strand: Reverse
Name: 159900441
Synonym: Haur_3926
Alternate gene names: NA
Gene position: 4921951-4919015 (Counterclockwise)
Preceding gene: 159900442
Following gene: 159900436
Centisome position: 77.55
GC content: 50.9
Gene sequence:
>2937_bases ATGGGGATTTCGTTTGTTGCGCCAAGCTATTTATGGTTTTTATTACTACTTATACCCGTTATTGCCTTAGGCTGGATGAA CGGGCGGCGTTTCCAACGTAGCCGGTTAATTGGCTCATTGCTGTTGCGCAGTTTGTTGTTAATCAGCCTGATTGGCTCAC TGGCAGGCGCACAAATCATCTCTCCCGTGCAGCAACTCACCACGATTTTTTTGGTGGATACCTCAGATTCGATCACTCCC AATCAGCGTAGTTTGCAAGATCAATTTATTGCTGATGCGCTGCAAACTATGCCCAAAGATGATCAAGCAGCGATTATTGT GTTTGGCCAAAATGCCTTGATCGAGCGCTTGCCCTCGGAAGTACGCACGCTCAGTCGCATTCAATCGGTACCAATCGCCG CACGAACAGATTTAGAACAAGCTATGACCCTGAGCTTTGCGCTGTTTCCGGCTGATACTCAAAAACGGGTAGTTTTGCTC TCTGATGGTGGCGAGAATAGCGGCCAATCGCTCAAAGCCCTTGAGTTGGCCAACGATCGTCAGATTGTCGTCGATGTGGT GGAAATTGCCCAAATTGGCGGAGCTGAGGTGGCAATTACTGCTTTGCGCATGCCCGGCCAAGCCCGCATCGGCCAAGAAT TACAAATTGTAGCCCAAATTGATAGTAACGAAGCTCAGGATGCTACCATTCGGATTTTGGTTGATCGTCAATTATATGCC GAATCAAGCCTTAGCTTGCCCAAAGGCACCTTGGAATATACCTCAACTGTGGTTTTGAACGATCAGGGCTTTCACAAAGT TTCAGCCCAGATTATTCCAACTAATGATATTCGCAAACAAAATAATGAAGCCACGGCTTTGGTTAATTTGCAAGGCCCGC CCAAAGTGCTGATCGTTGCCAACGATCCTGCCGATGCTGAAAATATTGCGCCAGCACTAGAGGCTGCCAAATTACAGGTA ACTGTGGTTGGTCCAACTGGGCTTCCGACAACTCTCGCTGATTTAGCCGATTACGAAGCAGTTGTCTTGGCGAATGTGCC TGAACGCCTGATTGCCGATGAAGCGCAGCAAGCACTCCAAACGTTTGTGCGCGATCTTGGGCGTGGCTTTGTGATGCTTG GCGGTGAAAATAGCTTTGGCATTGGGGGCTATACCAGTACCCCCATCGAAGAATTGCTGCCCGTAGAAATGCAATTGCGC AATCGCGAAAAATACCCGCCAGTGAGCGTCGCGGTGATCTTTGATATCTCGGGCAGTATGAGCGAAGTCGTTGGTGGCCG CCAAAAAGTAACCTTGGCCTCTGAAGGTGCGGCACGAGTAGTACAATTGCTGCGCGATTTTGATGAAATTACCGTGTTGC CGTTTGATAGCGCTGTGCAAAACCAATATGGGCCAGTTGCTGGCTCGGAGCGTGAAGTTGCCCAAGGCGAGATTATCGCC CGTGGCGTGACTGGCGGCGGCGGGATTAATGTTCATGATTCGTTGGTTGCGGCTGGCAATGTACTTAAAGGCCGCAATGC CCCGATTCGCCACATTATTTTGCTGGCTGATGGCTCGGATTCGCAGCAACAAGAAAATGCTGTGCGTCTAACCGATGAAC ATCGGCGTTTAGGCATTACCACCAGCACGATTGCGATTGGCAATGGTGGCGATGTGGGCTTTTTGAATAATGTGGCGGTG GCTGGTGGTGGACGGCATTTTTTAGTTGAAGATGCATTATCGTTGCCCGATATTGTGCTGCAAGATGCCCAACTTTCGCT AGCCCCCTATATTGTTGAAAAAGCCTTCTTGCCTTTGCTTGGTAGCGATAGTGTGATTATGGCCGAGTTGAATACCGCCA ATTGGCCGCAACTGCTGGGCTATAACGGCACGATGCCCAAGCAAAATGCCAATATGGTGTTGTGGGCCGATGAAGATGCG CCGCTCTTGGCTCAATGGCAATATGGCTTGGGTCGTTCAGTCGCTTGGATGAGTGATATGAAAGGCAAATGGGGGGCAAA TCTGGTGCGCTGGGATCAATTCGAGCGCTTAGCGGCTCAAATTGTTGGCTGGACACTACCTGTCATCTCCAATGAAACAA TTAGCATTAATACAACGTTTGTTGGCCCAGAGATGGAAATAATTTTAAATGCTCGCGATGCCAATGATGCTCCATTAACT GGGTTGATGATCGATGGCAACGTGGTCAACGATGGCGGGGTGCAATCAGGCTTGACCTTGGTTGAAGTGAGTGCTGGCAT CTATCAAGGCCGAATTGCCAGCCCTGGCGCGGGAACCTACTTTTTGCAATTGGGCGGACGCAATCGCGATGGCCAAGTGG TGTTTCAAGAAACGGCAGGGGTAATCGTGCCCTATTCGCCTGAATATCGCCAAGGCCAAGCCAACCCCAATTTGCTGGCG ACGATCGCTCAACGCAGCCAAGGCCGCGTTTTAACCGATGCGACCAAAGTTTTTGAGCATTCACTTGAATTGGTTACGCG AGCTACGCCGATTCACTTTAGTTTGCTATTGGCCGCGCTGGCTTTCTTGTTGCTCGATATTGCGGCGCGACGCTTGCGCT TTGGTCAATTAGGCCAAGCTTTGGCCGGAGTGCGTCGTCGTCAAGCGACACCTTCGCCAACGATGGGCGATTTAGCCGCC GCCAAGCAACGTGCCCGTAATAAAATGGGCCAAACTCAAACAGCGGCTGAGCCTGCCCCGATTACCCCGAAAAATACTCC AGTCTATCAACCTGGGGCCAATTATACCCCGCCAGTAGCTCAGCCCAAGCCCGAAGCAGCGCCTTCAGCTTCTACAAAGG TTGACCCAGCGCCCAAGCCGAGTATGCCAGCACCGACCCCAACCCAAGGGCCACCACCCAAAGCCGTTAATCTTGATGAG ATTACTGACCCCTTAGAACGATTACGTGCAGCCAAAAACCGTGCCCGACGGCAATAG
Upstream 100 bases:
>100_bases AGAAGCCTTAAATTGGCACAGGCCTAAAATGCCAAGGCTTGCCAAACGTGATACCATAGCAACATTGATTGATCGAGAAG TTTGATTAAAAGGTGTTGCT
Downstream 100 bases:
>100_bases ATTTTATTTTTGATAACCAAAAAAACCTCTGGCTGAAATCCAAGCGTTGGCTGCCAGAGGTTTATGGTGAGGTGGTTTCT ATAGGGTATCTTGGAGCTTA
Product: von Willebrand factor type A
Products: NA
Alternate protein names: Chloride Channel; Mg-Chelatase Subunit Chld; Membrane-Associated Protein; Von Willebrand Factor Type A Domain-Containing Protein; Von Willebrand Factor; Von Willebrand Factor Type A Domain Protein
Number of amino acids: Translated: 978; Mature: 977
Protein sequence:
>978_residues MGISFVAPSYLWFLLLLIPVIALGWMNGRRFQRSRLIGSLLLRSLLLISLIGSLAGAQIISPVQQLTTIFLVDTSDSITP NQRSLQDQFIADALQTMPKDDQAAIIVFGQNALIERLPSEVRTLSRIQSVPIAARTDLEQAMTLSFALFPADTQKRVVLL SDGGENSGQSLKALELANDRQIVVDVVEIAQIGGAEVAITALRMPGQARIGQELQIVAQIDSNEAQDATIRILVDRQLYA ESSLSLPKGTLEYTSTVVLNDQGFHKVSAQIIPTNDIRKQNNEATALVNLQGPPKVLIVANDPADAENIAPALEAAKLQV TVVGPTGLPTTLADLADYEAVVLANVPERLIADEAQQALQTFVRDLGRGFVMLGGENSFGIGGYTSTPIEELLPVEMQLR NREKYPPVSVAVIFDISGSMSEVVGGRQKVTLASEGAARVVQLLRDFDEITVLPFDSAVQNQYGPVAGSEREVAQGEIIA RGVTGGGGINVHDSLVAAGNVLKGRNAPIRHIILLADGSDSQQQENAVRLTDEHRRLGITTSTIAIGNGGDVGFLNNVAV AGGGRHFLVEDALSLPDIVLQDAQLSLAPYIVEKAFLPLLGSDSVIMAELNTANWPQLLGYNGTMPKQNANMVLWADEDA PLLAQWQYGLGRSVAWMSDMKGKWGANLVRWDQFERLAAQIVGWTLPVISNETISINTTFVGPEMEIILNARDANDAPLT GLMIDGNVVNDGGVQSGLTLVEVSAGIYQGRIASPGAGTYFLQLGGRNRDGQVVFQETAGVIVPYSPEYRQGQANPNLLA TIAQRSQGRVLTDATKVFEHSLELVTRATPIHFSLLLAALAFLLLDIAARRLRFGQLGQALAGVRRRQATPSPTMGDLAA AKQRARNKMGQTQTAAEPAPITPKNTPVYQPGANYTPPVAQPKPEAAPSASTKVDPAPKPSMPAPTPTQGPPPKAVNLDE ITDPLERLRAAKNRARRQ
Sequences:
>Translated_978_residues MGISFVAPSYLWFLLLLIPVIALGWMNGRRFQRSRLIGSLLLRSLLLISLIGSLAGAQIISPVQQLTTIFLVDTSDSITP NQRSLQDQFIADALQTMPKDDQAAIIVFGQNALIERLPSEVRTLSRIQSVPIAARTDLEQAMTLSFALFPADTQKRVVLL SDGGENSGQSLKALELANDRQIVVDVVEIAQIGGAEVAITALRMPGQARIGQELQIVAQIDSNEAQDATIRILVDRQLYA ESSLSLPKGTLEYTSTVVLNDQGFHKVSAQIIPTNDIRKQNNEATALVNLQGPPKVLIVANDPADAENIAPALEAAKLQV TVVGPTGLPTTLADLADYEAVVLANVPERLIADEAQQALQTFVRDLGRGFVMLGGENSFGIGGYTSTPIEELLPVEMQLR NREKYPPVSVAVIFDISGSMSEVVGGRQKVTLASEGAARVVQLLRDFDEITVLPFDSAVQNQYGPVAGSEREVAQGEIIA RGVTGGGGINVHDSLVAAGNVLKGRNAPIRHIILLADGSDSQQQENAVRLTDEHRRLGITTSTIAIGNGGDVGFLNNVAV AGGGRHFLVEDALSLPDIVLQDAQLSLAPYIVEKAFLPLLGSDSVIMAELNTANWPQLLGYNGTMPKQNANMVLWADEDA PLLAQWQYGLGRSVAWMSDMKGKWGANLVRWDQFERLAAQIVGWTLPVISNETISINTTFVGPEMEIILNARDANDAPLT GLMIDGNVVNDGGVQSGLTLVEVSAGIYQGRIASPGAGTYFLQLGGRNRDGQVVFQETAGVIVPYSPEYRQGQANPNLLA TIAQRSQGRVLTDATKVFEHSLELVTRATPIHFSLLLAALAFLLLDIAARRLRFGQLGQALAGVRRRQATPSPTMGDLAA AKQRARNKMGQTQTAAEPAPITPKNTPVYQPGANYTPPVAQPKPEAAPSASTKVDPAPKPSMPAPTPTQGPPPKAVNLDE ITDPLERLRAAKNRARRQ >Mature_977_residues GISFVAPSYLWFLLLLIPVIALGWMNGRRFQRSRLIGSLLLRSLLLISLIGSLAGAQIISPVQQLTTIFLVDTSDSITPN QRSLQDQFIADALQTMPKDDQAAIIVFGQNALIERLPSEVRTLSRIQSVPIAARTDLEQAMTLSFALFPADTQKRVVLLS DGGENSGQSLKALELANDRQIVVDVVEIAQIGGAEVAITALRMPGQARIGQELQIVAQIDSNEAQDATIRILVDRQLYAE SSLSLPKGTLEYTSTVVLNDQGFHKVSAQIIPTNDIRKQNNEATALVNLQGPPKVLIVANDPADAENIAPALEAAKLQVT VVGPTGLPTTLADLADYEAVVLANVPERLIADEAQQALQTFVRDLGRGFVMLGGENSFGIGGYTSTPIEELLPVEMQLRN REKYPPVSVAVIFDISGSMSEVVGGRQKVTLASEGAARVVQLLRDFDEITVLPFDSAVQNQYGPVAGSEREVAQGEIIAR GVTGGGGINVHDSLVAAGNVLKGRNAPIRHIILLADGSDSQQQENAVRLTDEHRRLGITTSTIAIGNGGDVGFLNNVAVA GGGRHFLVEDALSLPDIVLQDAQLSLAPYIVEKAFLPLLGSDSVIMAELNTANWPQLLGYNGTMPKQNANMVLWADEDAP LLAQWQYGLGRSVAWMSDMKGKWGANLVRWDQFERLAAQIVGWTLPVISNETISINTTFVGPEMEIILNARDANDAPLTG LMIDGNVVNDGGVQSGLTLVEVSAGIYQGRIASPGAGTYFLQLGGRNRDGQVVFQETAGVIVPYSPEYRQGQANPNLLAT IAQRSQGRVLTDATKVFEHSLELVTRATPIHFSLLLAALAFLLLDIAARRLRFGQLGQALAGVRRRQATPSPTMGDLAAA KQRARNKMGQTQTAAEPAPITPKNTPVYQPGANYTPPVAQPKPEAAPSASTKVDPAPKPSMPAPTPTQGPPPKAVNLDEI TDPLERLRAAKNRARRQ
Specific function: Unknown
COG id: COG5426
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104887; Mature: 104756
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGISFVAPSYLWFLLLLIPVIALGWMNGRRFQRSRLIGSLLLRSLLLISLIGSLAGAQII CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SPVQQLTTIFLVDTSDSITPNQRSLQDQFIADALQTMPKDDQAAIIVFGQNALIERLPSE HHHHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHCHHH VRTLSRIQSVPIAARTDLEQAMTLSFALFPADTQKRVVLLSDGGENSGQSLKALELANDR HHHHHHHHCCCCHHHCCHHHHHEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCC QIVVDVVEIAQIGGAEVAITALRMPGQARIGQELQIVAQIDSNEAQDATIRILVDRQLYA EEEHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECHHHH ESSLSLPKGTLEYTSTVVLNDQGFHKVSAQIIPTNDIRKQNNEATALVNLQGPPKVLIVA CCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCHHHHCCCCCEEEEEEECCCCEEEEEE NDPADAENIAPALEAAKLQVTVVGPTGLPTTLADLADYEAVVLANVPERLIADEAQQALQ CCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH TFVRDLGRGFVMLGGENSFGIGGYTSTPIEELLPVEMQLRNREKYPPVSVAVIFDISGSM HHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCH SEVVGGRQKVTLASEGAARVVQLLRDFDEITVLPFDSAVQNQYGPVAGSEREVAQGEIIA HHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCEEE RGVTGGGGINVHDSLVAAGNVLKGRNAPIRHIILLADGSDSQQQENAVRLTDEHRRLGIT EECCCCCCCCCCHHHHHHCCEECCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCEECEE TSTIAIGNGGDVGFLNNVAVAGGGRHFLVEDALSLPDIVLQDAQLSLAPYIVEKAFLPLL EEEEEECCCCCCCEECCEEEECCCCEEEEHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHC GSDSVIMAELNTANWPQLLGYNGTMPKQNANMVLWADEDAPLLAQWQYGLGRSVAWMSDM CCCCEEEEECCCCCCCHHCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHC KGKWGANLVRWDQFERLAAQIVGWTLPVISNETISINTTFVGPEMEIILNARDANDAPLT CCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCCEE GLMIDGNVVNDGGVQSGLTLVEVSAGIYQGRIASPGAGTYFLQLGGRNRDGQVVFQETAG EEEEECEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCC VIVPYSPEYRQGQANPNLLATIAQRSQGRVLTDATKVFEHSLELVTRATPIHFSLLLAAL EEEECCCCCCCCCCCCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AFLLLDIAARRLRFGQLGQALAGVRRRQATPSPTMGDLAAAKQRARNKMGQTQTAAEPAP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC ITPKNTPVYQPGANYTPPVAQPKPEAAPSASTKVDPAPKPSMPAPTPTQGPPPKAVNLDE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH ITDPLERLRAAKNRARRQ HHHHHHHHHHHHHHHCCC >Mature Secondary Structure GISFVAPSYLWFLLLLIPVIALGWMNGRRFQRSRLIGSLLLRSLLLISLIGSLAGAQII CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SPVQQLTTIFLVDTSDSITPNQRSLQDQFIADALQTMPKDDQAAIIVFGQNALIERLPSE HHHHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHCHHH VRTLSRIQSVPIAARTDLEQAMTLSFALFPADTQKRVVLLSDGGENSGQSLKALELANDR HHHHHHHHCCCCHHHCCHHHHHEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCC QIVVDVVEIAQIGGAEVAITALRMPGQARIGQELQIVAQIDSNEAQDATIRILVDRQLYA EEEHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECHHHH ESSLSLPKGTLEYTSTVVLNDQGFHKVSAQIIPTNDIRKQNNEATALVNLQGPPKVLIVA CCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCHHHHCCCCCEEEEEEECCCCEEEEEE NDPADAENIAPALEAAKLQVTVVGPTGLPTTLADLADYEAVVLANVPERLIADEAQQALQ CCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH TFVRDLGRGFVMLGGENSFGIGGYTSTPIEELLPVEMQLRNREKYPPVSVAVIFDISGSM HHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCH SEVVGGRQKVTLASEGAARVVQLLRDFDEITVLPFDSAVQNQYGPVAGSEREVAQGEIIA HHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCEEE RGVTGGGGINVHDSLVAAGNVLKGRNAPIRHIILLADGSDSQQQENAVRLTDEHRRLGIT EECCCCCCCCCCHHHHHHCCEECCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCEECEE TSTIAIGNGGDVGFLNNVAVAGGGRHFLVEDALSLPDIVLQDAQLSLAPYIVEKAFLPLL EEEEEECCCCCCCEECCEEEECCCCEEEEHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHC GSDSVIMAELNTANWPQLLGYNGTMPKQNANMVLWADEDAPLLAQWQYGLGRSVAWMSDM CCCCEEEEECCCCCCCHHCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHC KGKWGANLVRWDQFERLAAQIVGWTLPVISNETISINTTFVGPEMEIILNARDANDAPLT CCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCCEE GLMIDGNVVNDGGVQSGLTLVEVSAGIYQGRIASPGAGTYFLQLGGRNRDGQVVFQETAG EEEEECEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCC VIVPYSPEYRQGQANPNLLATIAQRSQGRVLTDATKVFEHSLELVTRATPIHFSLLLAAL EEEECCCCCCCCCCCCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHH AFLLLDIAARRLRFGQLGQALAGVRRRQATPSPTMGDLAAAKQRARNKMGQTQTAAEPAP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC ITPKNTPVYQPGANYTPPVAQPKPEAAPSASTKVDPAPKPSMPAPTPTQGPPPKAVNLDE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH ITDPLERLRAAKNRARRQ HHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA