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The map label for this gene is 159900375

Identifier: 159900375

GI number: 159900375

Start: 4848792

End: 4849409

Strand: Reverse

Name: 159900375

Synonym: Haur_3860

Alternate gene names: NA

Gene position: 4849409-4848792 (Counterclockwise)

Preceding gene: 159900376

Following gene: 159900374

Centisome position: 76.41

GC content: 51.94

Gene sequence:

>618_bases
ATGGGCACATGTATGAACACATTGGCTAATGCTGCGCTGATTCCCCTGCTGATCGCTGCCAAACAGGCCGACCGAGGCGC
GTTCGTCCAAATCTATGAGCATTATCGCAATGCCTTGCTGCGCTTTTTCTATGCTCATTGCAGCAGTGCTGATCTGGCTG
AGGAGTTGAGTAGCGAACTATGGTTGCGGGTGGTGGAGCATCTGCCACACTTCAATTTGCCGCTCGAGCATGCTGATTTG
GCCTTTACTGGCTGGCTTTTTCAAATTGCGCGGCATCTGCTCACCGATGGTTATCGCCAACGCCAGCGTCAAGCCTATGA
ACCACTCAACGAGGCAACCGCGCTGGCCAACTCTGATCCAACCGCAATTAGCGAATTACACGCAATTCAAGCATCGTTAG
TCCATGCTTTAGCCGCGCTCACGCCCGATCAACGTGAGGTAGTGTACCTACGCTTTTTTGCCCACTACACCAGTGCCCAA
GTCGCTGCCTATACTGGTCGAACGGAATATGCGGTCAAATCGTTGCAATATCGTGCCCTGCATACCCTTGCTCGCTCAAC
CGAGCTTCGGCAATGGTATCTTGGTGAAAAAGAGCCGCTGTTTAAATTTAGCATGTGA

Upstream 100 bases:

>100_bases
GATAAGTGCCTTGTAGTGCAGGCGAGATATGCCTTTAGGGCTATAGGCAGTTTGCGCAATAAGCCGTAGCCTAAAAGCCT
GATTGATTGAATTATGTTGA

Downstream 100 bases:

>100_bases
TGAAAACCTTTCCAAGAGAGAATAGGACTAATGGTCTATCAGCAAGCCATAGCGAAAAAGCACTCCTCACGTTTTACCTA
GCAGAATCGCAACAGAAGGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MGTCMNTLANAALIPLLIAAKQADRGAFVQIYEHYRNALLRFFYAHCSSADLAEELSSELWLRVVEHLPHFNLPLEHADL
AFTGWLFQIARHLLTDGYRQRQRQAYEPLNEATALANSDPTAISELHAIQASLVHALAALTPDQREVVYLRFFAHYTSAQ
VAAYTGRTEYAVKSLQYRALHTLARSTELRQWYLGEKEPLFKFSM

Sequences:

>Translated_205_residues
MGTCMNTLANAALIPLLIAAKQADRGAFVQIYEHYRNALLRFFYAHCSSADLAEELSSELWLRVVEHLPHFNLPLEHADL
AFTGWLFQIARHLLTDGYRQRQRQAYEPLNEATALANSDPTAISELHAIQASLVHALAALTPDQREVVYLRFFAHYTSAQ
VAAYTGRTEYAVKSLQYRALHTLARSTELRQWYLGEKEPLFKFSM
>Mature_204_residues
GTCMNTLANAALIPLLIAAKQADRGAFVQIYEHYRNALLRFFYAHCSSADLAEELSSELWLRVVEHLPHFNLPLEHADLA
FTGWLFQIARHLLTDGYRQRQRQAYEPLNEATALANSDPTAISELHAIQASLVHALAALTPDQREVVYLRFFAHYTSAQV
AAYTGRTEYAVKSLQYRALHTLARSTELRQWYLGEKEPLFKFSM

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23370; Mature: 23239

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTCMNTLANAALIPLLIAAKQADRGAFVQIYEHYRNALLRFFYAHCSSADLAEELSSEL
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
WLRVVEHLPHFNLPLEHADLAFTGWLFQIARHLLTDGYRQRQRQAYEPLNEATALANSDP
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
TAISELHAIQASLVHALAALTPDQREVVYLRFFAHYTSAQVAAYTGRTEYAVKSLQYRAL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
HTLARSTELRQWYLGEKEPLFKFSM
HHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GTCMNTLANAALIPLLIAAKQADRGAFVQIYEHYRNALLRFFYAHCSSADLAEELSSEL
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
WLRVVEHLPHFNLPLEHADLAFTGWLFQIARHLLTDGYRQRQRQAYEPLNEATALANSDP
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
TAISELHAIQASLVHALAALTPDQREVVYLRFFAHYTSAQVAAYTGRTEYAVKSLQYRAL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
HTLARSTELRQWYLGEKEPLFKFSM
HHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA