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The map label for this gene is ctpA [H]

Identifier: 159900329

GI number: 159900329

Start: 4784665

End: 4785999

Strand: Reverse

Name: ctpA [H]

Synonym: Haur_3812

Alternate gene names: 159900329

Gene position: 4785999-4784665 (Counterclockwise)

Preceding gene: 159900330

Following gene: 159900325

Centisome position: 75.41

GC content: 52.66

Gene sequence:

>1335_bases
ATGCGTTATCGTTGGTTGCTTTTGCTAGGAATTGGATTGCTCGCTAGCTGTACTGCACAATTGCCTTGGGCGGCCACACC
AACTGTGCCACCAACCACGGCTCCCCTCGCCTTGGCAACTCCAACCTTTTTGCCCAGCCCAACCGCGCAGCCAAGCCTTG
AGCCTACCCCAACCGTTGAGCTAGCGCAAGCTACGCCAACCGCGACAACCCCAATGAGTCCCGCCGAACGGCTAGCTTTA
TTCAATGATGTTTGGCAAACGGTCAATGAACATTATCTGTATCCTGATTTTAATGGCGTGGATTGGGCCGCCGTGCGTGC
TGAAATCGAGCCGCAAGTGCAGGCTGCGCCCGATGATGAAACGCTCTACACAATTCTCGAAGGCATGGTCGCCAAACTCG
ATGATCAACATTCGCGCTTTGCCCGACCAGTCGAAGCAGTTTATGAAGATGCCGTTGCCAGCGGAACCGATAGCTATGTT
GGCATCGGTGTTTTGACAATTCACGAAGAAAATGCCGCTTTTATTACCTTGGTTTTCCCTGATAGCCCAGCCCAAGCGGC
GGGCTTGATGCGCGGCGATCGCATTACCGCCGTTGAAGGCCAGCCGTTTACCAATGCCGACCAAATTCGTGGCCCCGAAG
GCAGCCAAGTGCGGCTGACCATTCAAACACCGCAAGCTGACCCACGCGAGTTGCTGATAACGCGGCGGGCAGTAGTGGGC
AAAATTACGCCATCAGGCCGCCGCTTGCCCAATGCTCCAACCGTTGGCTATTTGCTGATTCCCAGCTTGTGGGCCGACGA
TATGCATACCCAAGTTGTCAGCGAACTCAGCAAATTGGTCGCCGATCCTCAGCCGCTTGATGGTTTGATTTTGGATCTGC
GATCCAACGGCGGTGGCTGGCGTAGCGTGCTTGAAGGCATTTTGGGTCAATTTGTCAGCGGCGAGGTTGGCAATTTCTAT
AGTCAGGAAAAATTGTATCCATTAACTGTTAAACCTGGCCTGTTGTACGAGCAGCTGAAGCAAGTGCCGCTAGCGGTGCT
CATCGACAAAGATAGTGCTTCGTATGCTGAGGTTTTGGCTGGAACGCTGCAATTTAATGGGGCTTTGGTGCTGGGCCAAG
CCAGCCAAGGCAATACCGAAACGATTTTTCAATATAATTTTGAGGATGGCTCACGCTTGTGGGTGGCCCAAGAGGGCTTT
AAATTGCCTGATGGCAGTAATTTTGAAACCAAAGGTGTGCAGCCAAATATTGTGGTCGAAGACGATTGGACCCAATACAC
GATTCCGAATGATCCGGCGGTATTGCAGGCGATTGTTTCATTTAGCGAGCGCTAG

Upstream 100 bases:

>100_bases
CGAACAAATGCTCTTGATGGTTTAAATCGATCGTTCTACCGTAAGCCGCTGGGCTGCTTGTGGGCAGTTTACAGCGGCTT
ATGCTTAATTTGGGGTAGTT

Downstream 100 bases:

>100_bases
ACTTAAACAATAATGGCGCAAGCAAGGCCAAAATTGCCAGGGTCAGCAATGGCTCAAATGGTGGCCAAGCTAATTTGGGG
TAAATGCGATAAACCATGGC

Product: peptidase S41

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MRYRWLLLLGIGLLASCTAQLPWAATPTVPPTTAPLALATPTFLPSPTAQPSLEPTPTVELAQATPTATTPMSPAERLAL
FNDVWQTVNEHYLYPDFNGVDWAAVRAEIEPQVQAAPDDETLYTILEGMVAKLDDQHSRFARPVEAVYEDAVASGTDSYV
GIGVLTIHEENAAFITLVFPDSPAQAAGLMRGDRITAVEGQPFTNADQIRGPEGSQVRLTIQTPQADPRELLITRRAVVG
KITPSGRRLPNAPTVGYLLIPSLWADDMHTQVVSELSKLVADPQPLDGLILDLRSNGGGWRSVLEGILGQFVSGEVGNFY
SQEKLYPLTVKPGLLYEQLKQVPLAVLIDKDSASYAEVLAGTLQFNGALVLGQASQGNTETIFQYNFEDGSRLWVAQEGF
KLPDGSNFETKGVQPNIVVEDDWTQYTIPNDPAVLQAIVSFSER

Sequences:

>Translated_444_residues
MRYRWLLLLGIGLLASCTAQLPWAATPTVPPTTAPLALATPTFLPSPTAQPSLEPTPTVELAQATPTATTPMSPAERLAL
FNDVWQTVNEHYLYPDFNGVDWAAVRAEIEPQVQAAPDDETLYTILEGMVAKLDDQHSRFARPVEAVYEDAVASGTDSYV
GIGVLTIHEENAAFITLVFPDSPAQAAGLMRGDRITAVEGQPFTNADQIRGPEGSQVRLTIQTPQADPRELLITRRAVVG
KITPSGRRLPNAPTVGYLLIPSLWADDMHTQVVSELSKLVADPQPLDGLILDLRSNGGGWRSVLEGILGQFVSGEVGNFY
SQEKLYPLTVKPGLLYEQLKQVPLAVLIDKDSASYAEVLAGTLQFNGALVLGQASQGNTETIFQYNFEDGSRLWVAQEGF
KLPDGSNFETKGVQPNIVVEDDWTQYTIPNDPAVLQAIVSFSER
>Mature_444_residues
MRYRWLLLLGIGLLASCTAQLPWAATPTVPPTTAPLALATPTFLPSPTAQPSLEPTPTVELAQATPTATTPMSPAERLAL
FNDVWQTVNEHYLYPDFNGVDWAAVRAEIEPQVQAAPDDETLYTILEGMVAKLDDQHSRFARPVEAVYEDAVASGTDSYV
GIGVLTIHEENAAFITLVFPDSPAQAAGLMRGDRITAVEGQPFTNADQIRGPEGSQVRLTIQTPQADPRELLITRRAVVG
KITPSGRRLPNAPTVGYLLIPSLWADDMHTQVVSELSKLVADPQPLDGLILDLRSNGGGWRSVLEGILGQFVSGEVGNFY
SQEKLYPLTVKPGLLYEQLKQVPLAVLIDKDSASYAEVLAGTLQFNGALVLGQASQGNTETIFQYNFEDGSRLWVAQEGF
KLPDGSNFETKGVQPNIVVEDDWTQYTIPNDPAVLQAIVSFSER

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 48238; Mature: 48238

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYRWLLLLGIGLLASCTAQLPWAATPTVPPTTAPLALATPTFLPSPTAQPSLEPTPTVE
CCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEE
LAQATPTATTPMSPAERLALFNDVWQTVNEHYLYPDFNGVDWAAVRAEIEPQVQAAPDDE
EECCCCCCCCCCCHHHHHHHHHHHHHHHHCCEECCCCCCCCCEEEEEECCCCEECCCCCH
TLYTILEGMVAKLDDQHSRFARPVEAVYEDAVASGTDSYVGIGVLTIHEENAAFITLVFP
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEEEEEEC
DSPAQAAGLMRGDRITAVEGQPFTNADQIRGPEGSQVRLTIQTPQADPRELLITRRAVVG
CCCHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHE
KITPSGRRLPNAPTVGYLLIPSLWADDMHTQVVSELSKLVADPQPLDGLILDLRSNGGGW
EECCCCCCCCCCCCEEEEEECHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHH
RSVLEGILGQFVSGEVGNFYSQEKLYPLTVKPGLLYEQLKQVPLAVLIDKDSASYAEVLA
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCEEEEEECCCCHHHHHHH
GTLQFNGALVLGQASQGNTETIFQYNFEDGSRLWVAQEGFKLPDGSNFETKGVQPNIVVE
HHEEECCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC
DDWTQYTIPNDPAVLQAIVSFSER
CCCEEEECCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRYRWLLLLGIGLLASCTAQLPWAATPTVPPTTAPLALATPTFLPSPTAQPSLEPTPTVE
CCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEE
LAQATPTATTPMSPAERLALFNDVWQTVNEHYLYPDFNGVDWAAVRAEIEPQVQAAPDDE
EECCCCCCCCCCCHHHHHHHHHHHHHHHHCCEECCCCCCCCCEEEEEECCCCEECCCCCH
TLYTILEGMVAKLDDQHSRFARPVEAVYEDAVASGTDSYVGIGVLTIHEENAAFITLVFP
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEEEEEEC
DSPAQAAGLMRGDRITAVEGQPFTNADQIRGPEGSQVRLTIQTPQADPRELLITRRAVVG
CCCHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHE
KITPSGRRLPNAPTVGYLLIPSLWADDMHTQVVSELSKLVADPQPLDGLILDLRSNGGGW
EECCCCCCCCCCCCEEEEEECHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHH
RSVLEGILGQFVSGEVGNFYSQEKLYPLTVKPGLLYEQLKQVPLAVLIDKDSASYAEVLA
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCEEEEEECCCCHHHHHHH
GTLQFNGALVLGQASQGNTETIFQYNFEDGSRLWVAQEGFKLPDGSNFETKGVQPNIVVE
HHEEECCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC
DDWTQYTIPNDPAVLQAIVSFSER
CCCEEEECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1421151 [H]