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The map label for this gene is pdxS

Identifier: 159900325

GI number: 159900325

Start: 4779792

End: 4780673

Strand: Reverse

Name: pdxS

Synonym: Haur_3808

Alternate gene names: 159900325

Gene position: 4780673-4779792 (Counterclockwise)

Preceding gene: 159900329

Following gene: 159900324

Centisome position: 75.33

GC content: 52.15

Gene sequence:

>882_bases
ATGGAAACTTCAACATTTACCACCAAAGTCGGCTTGGCCCAAATGCTCAAGGGCGGCGTGATTATGGATGTGGTTACGCC
AGACCAAGCTAAAATTGCTGAAGAAGCTGGCGCAGTCGCCGTGATGGCGCTCGAACGGGTTCCAGCCGATATTCGTAAGG
ATGGCGGCGTGGCTCGTATGAGCGACCCCGAAATGATCCAAGGCATCATTGAAGCAGTCACCATTCCTGTGATGGCTAAA
TCACGGATTGGTCACTTTGTTGAAGCGCAAATCCTCGAAGCGATTGGGGTTGATTATATTGACGAGAGCGAAGTGCTCAC
GCCTGCTGATGAAGAACATCATACCAACAAGCACAATTTCAAAGTGCCATTCGTCTGTGGCGCTCGTAATTTGGGCGAAG
CCTTGCGCCGCATCACCGAAGGCGCAGCCATGATTCGCACTAAGGGCGAAGCTGGCACGGGCAATGTGGTTGAAGCTGTG
CGCCACGCTCGCACGATGTTCGCCGAAATTCGCCGTTTGCAAACCCTCGATCCCGATGAGTTGTTTGTGGCTGCCAAAAA
CTTGCAAGCTCCCTATGAATTGGTCAAGCAAATTGCTGAATTAGGCCGCTTACCAGTTGTCAATTTCGCTGCTGGCGGGA
TTGCAACTCCAGCCGATGCTGCTTTGATGATGCAATTGGGTGTTGATGGCGTGTTCGTTGGCTCAGGGATTTTCAAATCG
GGCAATCCTGCCAAACGCGCTAAAGCAATTGTTGAAGCAACCACCCACTTCCGCGATGCCAAGCTTTTGGCCGAAATTAG
CCGCAACTTGGGCGAAGCCATGGTCGGCATCAACATCGATACCATCCCAGAGAACGAGTTGCTCGCCAAACGCGGTTGGT
AA

Upstream 100 bases:

>100_bases
CCCCCCGCAATGTTTATCGATTGTCACAATCAGCCATGGTACAATAGCGCCTGTCTAATCAAACGACACTCAAAATCATC
AATCCACCAGAGGAATTGCA

Downstream 100 bases:

>100_bases
TGTTATAAAGTCAAAAGGCAGAAGGCAAAAGGCAAAGCAGCAACGATGCTAGCCGATTGCCTTCTTTTTTATATTCAAAA
AGGAATAAAGCAATGACGGT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
METSTFTTKVGLAQMLKGGVIMDVVTPDQAKIAEEAGAVAVMALERVPADIRKDGGVARMSDPEMIQGIIEAVTIPVMAK
SRIGHFVEAQILEAIGVDYIDESEVLTPADEEHHTNKHNFKVPFVCGARNLGEALRRITEGAAMIRTKGEAGTGNVVEAV
RHARTMFAEIRRLQTLDPDELFVAAKNLQAPYELVKQIAELGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKS
GNPAKRAKAIVEATTHFRDAKLLAEISRNLGEAMVGINIDTIPENELLAKRGW

Sequences:

>Translated_293_residues
METSTFTTKVGLAQMLKGGVIMDVVTPDQAKIAEEAGAVAVMALERVPADIRKDGGVARMSDPEMIQGIIEAVTIPVMAK
SRIGHFVEAQILEAIGVDYIDESEVLTPADEEHHTNKHNFKVPFVCGARNLGEALRRITEGAAMIRTKGEAGTGNVVEAV
RHARTMFAEIRRLQTLDPDELFVAAKNLQAPYELVKQIAELGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKS
GNPAKRAKAIVEATTHFRDAKLLAEISRNLGEAMVGINIDTIPENELLAKRGW
>Mature_293_residues
METSTFTTKVGLAQMLKGGVIMDVVTPDQAKIAEEAGAVAVMALERVPADIRKDGGVARMSDPEMIQGIIEAVTIPVMAK
SRIGHFVEAQILEAIGVDYIDESEVLTPADEEHHTNKHNFKVPFVCGARNLGEALRRITEGAAMIRTKGEAGTGNVVEAV
RHARTMFAEIRRLQTLDPDELFVAAKNLQAPYELVKQIAELGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKS
GNPAKRAKAIVEATTHFRDAKLLAEISRNLGEAMVGINIDTIPENELLAKRGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=297, Percent_Identity=64.6464646464647, Blast_Score=383, Evalue=1e-107,
Organism=Saccharomyces cerevisiae, GI6323996, Length=297, Percent_Identity=66.3299663299663, Blast_Score=378, Evalue=1e-106,
Organism=Saccharomyces cerevisiae, GI6321049, Length=297, Percent_Identity=65.993265993266, Blast_Score=378, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXS_HERA2 (A9B891)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001546572.1
- ProteinModelPortal:   A9B891
- SMR:   A9B891
- GeneID:   5735672
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_3808
- HOGENOM:   HBG292342
- OMA:   ARMSDPD
- ProtClustDB:   PRK04180
- BioCyc:   HAUR316274:HAUR_3808-MONOMER
- HAMAP:   MF_01824
- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852
- Gene3D:   G3DSA:3.20.20.70
- PIRSF:   PIRSF029271
- TIGRFAMs:   TIGR00343

Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel

EC number: NA

Molecular weight: Translated: 31449; Mature: 31449

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METSTFTTKVGLAQMLKGGVIMDVVTPDQAKIAEEAGAVAVMALERVPADIRKDGGVARM
CCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEHHHHHCCHHHHCCCCCCCC
SDPEMIQGIIEAVTIPVMAKSRIGHFVEAQILEAIGVDYIDESEVLTPADEEHHTNKHNF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCE
KVPFVCGARNLGEALRRITEGAAMIRTKGEAGTGNVVEAVRHARTMFAEIRRLQTLDPDE
EEEEEECCHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
LFVAAKNLQAPYELVKQIAELGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKS
HHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
GNPAKRAKAIVEATTHFRDAKLLAEISRNLGEAMVGINIDTIPENELLAKRGW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
METSTFTTKVGLAQMLKGGVIMDVVTPDQAKIAEEAGAVAVMALERVPADIRKDGGVARM
CCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEHHHHHCCHHHHCCCCCCCC
SDPEMIQGIIEAVTIPVMAKSRIGHFVEAQILEAIGVDYIDESEVLTPADEEHHTNKHNF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCE
KVPFVCGARNLGEALRRITEGAAMIRTKGEAGTGNVVEAVRHARTMFAEIRRLQTLDPDE
EEEEEECCHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
LFVAAKNLQAPYELVKQIAELGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKS
HHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
GNPAKRAKAIVEATTHFRDAKLLAEISRNLGEAMVGINIDTIPENELLAKRGW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA