| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900278
Identifier: 159900278
GI number: 159900278
Start: 4730823
End: 4732277
Strand: Reverse
Name: 159900278
Synonym: Haur_3761
Alternate gene names: NA
Gene position: 4732277-4730823 (Counterclockwise)
Preceding gene: 159900279
Following gene: 159900276
Centisome position: 74.56
GC content: 53.2
Gene sequence:
>1455_bases ATGACGACTACCACAACCACCAACGACGGAGCAATCACCGACGAACGCCGTTCACAATCTGTTTTCTATCGCGCAATCTG GCGTTGGCATTTCTATGCCGGTTTGTTTGTTGTGCCGCTGATGATTGTCCTAGCCGTAACTGGCAGCATTTATCTATTCA AGCCCCAACTTGACCGTTTGATGTACGGCGATTTGATGCATGTCCAACACACCAGTGGCTCGGCGCAAAGCTACACTAGC CAATTGGCCGCTGCCCAAGCTGCTTATCCCGCTGCCAGCGTTGGCAAAATTCGCCCAAGCGATGCCCACGATCGTAGCAC TGAAATTAGTATGAGCACCAGCGATGGCCGTAATCTGACGGTTTTCGTCAATCCCTATACCAATCAAGTGCTCGGCGAGC GCGATGAAGATTGGAATTTACAAACGATTGCCTTGAAATTACACGGCGAGTTGCTGATTGGCACAACGGGCGATCGGATT ATTGAATTAGCCGCTTGCTGGGCGATTTTGCTGACTCTTTCGGGGTTGTATCTCTGGTGGCCACGCTCGAAAAGTGGCAT CTGGGGCACGTGGCTGCCACGCTTGCGCAGCAAAAACAAACGGATTTTCTGGCGCGATTTGCATGCCGTGCCTGGCATGT ATGCCTCGTTGATTGTGCTGTTTTTGCTGATTTCGGGCTTGCCGTGGACTGGCTATTGGGGTGATAAATTTGCTAATGTT TGGAGCGGTTACCCCAATCAACTTTGGAGCAATATTCCTGAATCTACAGTATTGACTGGCAGCCTCAACACCACAACCGA CAAAGTTGTGCCGTGGGCAGTTGAACAAGCGCCATTGCCTCAATCTGACCCTGATCATGCTGAGCATCGTGGTGATGGAG CGAGTGCGCCGGTGCCAAGCAGCGCTACCGAAGGCCCACAAGCCGCAACGCCCGTCACGCTTGATTCGGTGATTGAAGTC GCCAAAGCCCGTGGCGTGATTGCCAGCTTTACGGTTACGCCACCTGATGGAGAAAAAGGCGTGTACACCATCGCTGCGGT GGCGAATGATCCTGCTGATGAAGCCACAATTCACGTTGATCAATATAGCGGAGCGATTTTGGCCGACATTCGCTGGCGTG ATTATGCCATGGTTCCCAAAGCTGTTAGCATGGGTATTTCGCTGCACGAAGGTAAATATTTCGGGCTGGCTAACCAACTT TTAGCCTTGTTTGGGGCCATGACGGTGCTGTTGCTATCGGTTTCGGGCGTGGTGTTGTGGTGGAAACGCCGCCCTGAGGG CCGCTTGGGTGCGCCCAATTTGCCAGCCAACTTCCCCCACTGGAAGCCTGTGTTGCTGATGGTGGTGCTGGCGAGCTTGG CCTTCCCCTTGGTTGGCGCTTCGTTGTTGTTTATGCTGGTGTTGGACCTGACGGTGTTTCGGTTTGCGCCAAGCCTCAAG CAACGCCTTGCTTAG
Upstream 100 bases:
>100_bases CGTGATCCAGGTGGCAGTCTGCACCAACAGTATTAATGTCGATCGCCACAGGTGGTTAGCTGCCTGTGGCTCCAACCAGC ACCACAACGAGGTTTTTTGA
Downstream 100 bases:
>100_bases GGTAATTGCGGCTCGTTGCTATGACTGCGAGCAAAGCGGTCGAGCACCCGCCGCAACACCCGTAAGGCCAATTCCATCTG TGGCACGGAAAGTAAGCGGG
Product: peptidase
Products: NA
Alternate protein names: Iron-Regulated Membrane Protein; PepSY-Associated TM Helix Domain Protein; PepSY-Associated TM Helix Domain-Containing Protein; Sulfite Reductase; PepSY-Associated TM Helix Family; Peptidase; Flavodoxin/Nitric Oxide Synthase; PepSY-Associated TM Helix Family Protein; PepSY-Associated Membrane Protein; PepSY-Associated TM Helix; PepSY-Associated TM Helix Containing Protein; Pepsy-Associated Tm Helix Domain Protein; Outer Membrane Protein; Oxidoreductase; Transmembrane Protein; PepSY Amd Peptidase M4 Protein; Conserved Iron-Regulated Membrane Protein; M4 Family Peptidase; Bifunctional Protein Flavoprotein Alpha-Component; Bifunctional Sulfite Reductase; Sulfite Reductase Flavoprotein Subunit Alpha; Transmembrane Transporter; Iron-Regulated Transmembrane Protein
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MTTTTTTNDGAITDERRSQSVFYRAIWRWHFYAGLFVVPLMIVLAVTGSIYLFKPQLDRLMYGDLMHVQHTSGSAQSYTS QLAAAQAAYPAASVGKIRPSDAHDRSTEISMSTSDGRNLTVFVNPYTNQVLGERDEDWNLQTIALKLHGELLIGTTGDRI IELAACWAILLTLSGLYLWWPRSKSGIWGTWLPRLRSKNKRIFWRDLHAVPGMYASLIVLFLLISGLPWTGYWGDKFANV WSGYPNQLWSNIPESTVLTGSLNTTTDKVVPWAVEQAPLPQSDPDHAEHRGDGASAPVPSSATEGPQAATPVTLDSVIEV AKARGVIASFTVTPPDGEKGVYTIAAVANDPADEATIHVDQYSGAILADIRWRDYAMVPKAVSMGISLHEGKYFGLANQL LALFGAMTVLLLSVSGVVLWWKRRPEGRLGAPNLPANFPHWKPVLLMVVLASLAFPLVGASLLFMLVLDLTVFRFAPSLK QRLA
Sequences:
>Translated_484_residues MTTTTTTNDGAITDERRSQSVFYRAIWRWHFYAGLFVVPLMIVLAVTGSIYLFKPQLDRLMYGDLMHVQHTSGSAQSYTS QLAAAQAAYPAASVGKIRPSDAHDRSTEISMSTSDGRNLTVFVNPYTNQVLGERDEDWNLQTIALKLHGELLIGTTGDRI IELAACWAILLTLSGLYLWWPRSKSGIWGTWLPRLRSKNKRIFWRDLHAVPGMYASLIVLFLLISGLPWTGYWGDKFANV WSGYPNQLWSNIPESTVLTGSLNTTTDKVVPWAVEQAPLPQSDPDHAEHRGDGASAPVPSSATEGPQAATPVTLDSVIEV AKARGVIASFTVTPPDGEKGVYTIAAVANDPADEATIHVDQYSGAILADIRWRDYAMVPKAVSMGISLHEGKYFGLANQL LALFGAMTVLLLSVSGVVLWWKRRPEGRLGAPNLPANFPHWKPVLLMVVLASLAFPLVGASLLFMLVLDLTVFRFAPSLK QRLA >Mature_483_residues TTTTTTNDGAITDERRSQSVFYRAIWRWHFYAGLFVVPLMIVLAVTGSIYLFKPQLDRLMYGDLMHVQHTSGSAQSYTSQ LAAAQAAYPAASVGKIRPSDAHDRSTEISMSTSDGRNLTVFVNPYTNQVLGERDEDWNLQTIALKLHGELLIGTTGDRII ELAACWAILLTLSGLYLWWPRSKSGIWGTWLPRLRSKNKRIFWRDLHAVPGMYASLIVLFLLISGLPWTGYWGDKFANVW SGYPNQLWSNIPESTVLTGSLNTTTDKVVPWAVEQAPLPQSDPDHAEHRGDGASAPVPSSATEGPQAATPVTLDSVIEVA KARGVIASFTVTPPDGEKGVYTIAAVANDPADEATIHVDQYSGAILADIRWRDYAMVPKAVSMGISLHEGKYFGLANQLL ALFGAMTVLLLSVSGVVLWWKRRPEGRLGAPNLPANFPHWKPVLLMVVLASLAFPLVGASLLFMLVLDLTVFRFAPSLKQ RLA
Specific function: Unknown
COG id: COG3182
COG function: function code S; Uncharacterized iron-regulated membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53174; Mature: 53042
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTTTTNDGAITDERRSQSVFYRAIWRWHFYAGLFVVPLMIVLAVTGSIYLFKPQLDRL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHH MYGDLMHVQHTSGSAQSYTSQLAAAQAAYPAASVGKIRPSDAHDRSTEISMSTSDGRNLT HHCCHHEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE VFVNPYTNQVLGERDEDWNLQTIALKLHGELLIGTTGDRIIELAACWAILLTLSGLYLWW EEECCCHHHHCCCCCCCCCEEEEEEEEECEEEEECCCHHHHHHHHHHHHHHHHCCEEEEE PRSKSGIWGTWLPRLRSKNKRIFWRDLHAVPGMYASLIVLFLLISGLPWTGYWGDKFANV CCCCCCCCHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH WSGYPNQLWSNIPESTVLTGSLNTTTDKVVPWAVEQAPLPQSDPDHAEHRGDGASAPVPS HCCCHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCC SATEGPQAATPVTLDSVIEVAKARGVIASFTVTPPDGEKGVYTIAAVANDPADEATIHVD CCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEE QYSGAILADIRWRDYAMVPKAVSMGISLHEGKYFGLANQLLALFGAMTVLLLSVSGVVLW CCCCEEEEEECCCCHHHCCHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEE WKRRPEGRLGAPNLPANFPHWKPVLLMVVLASLAFPLVGASLLFMLVLDLTVFRFAPSLK EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH QRLA HHCC >Mature Secondary Structure TTTTTTNDGAITDERRSQSVFYRAIWRWHFYAGLFVVPLMIVLAVTGSIYLFKPQLDRL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHH MYGDLMHVQHTSGSAQSYTSQLAAAQAAYPAASVGKIRPSDAHDRSTEISMSTSDGRNLT HHCCHHEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE VFVNPYTNQVLGERDEDWNLQTIALKLHGELLIGTTGDRIIELAACWAILLTLSGLYLWW EEECCCHHHHCCCCCCCCCEEEEEEEEECEEEEECCCHHHHHHHHHHHHHHHHCCEEEEE PRSKSGIWGTWLPRLRSKNKRIFWRDLHAVPGMYASLIVLFLLISGLPWTGYWGDKFANV CCCCCCCCHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH WSGYPNQLWSNIPESTVLTGSLNTTTDKVVPWAVEQAPLPQSDPDHAEHRGDGASAPVPS HCCCHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCC SATEGPQAATPVTLDSVIEVAKARGVIASFTVTPPDGEKGVYTIAAVANDPADEATIHVD CCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEE QYSGAILADIRWRDYAMVPKAVSMGISLHEGKYFGLANQLLALFGAMTVLLLSVSGVVLW CCCCEEEEEECCCCHHHCCHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEE WKRRPEGRLGAPNLPANFPHWKPVLLMVVLASLAFPLVGASLLFMLVLDLTVFRFAPSLK EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH QRLA HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA