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The map label for this gene is cydA [H]

Identifier: 159900276

GI number: 159900276

Start: 4727893

End: 4729269

Strand: Reverse

Name: cydA [H]

Synonym: Haur_3759

Alternate gene names: 159900276

Gene position: 4729269-4727893 (Counterclockwise)

Preceding gene: 159900278

Following gene: 159900275

Centisome position: 74.52

GC content: 49.96

Gene sequence:

>1377_bases
ATGGATGCATTGATTCTTGCTCGTTGGCAATTTGCCGTTACAACGGTTTATCACTTTTTGTTTGTACCGCTAACAATCGG
GCTTTCGTTTTTTGTGGCTTTGCTACAAACCATCTACTATCGCACTGGCGATATCACCTATAAACGTATGACCAAATTTT
GGGGCCATCTGTTTTTGATCAATTTTGCGATTGGCGTGGCCACCGGGATTGTCCAAGAGTTTCAGTTTGGCATGAACTGG
TCGGAATATTCGCGCTTTGTCGGCGATATTTTCGGCGCTCCGTTAGCAATTGAAGCCTTGATGGCCTTCTTTATTGAATC
GACCTTCTTAGGAATTTGGATCTTCGGCTGGGATCGCATACCCAAGCTCGCTCACTTGGCTTCGATTTGGCTGGTAGCGA
TTGCCACGATGCTCTCCAGTTTGTGGATTTTGATCGCCAATTCGTTTATGCACCAGCCAGTTGGCTATGTGTTACGCAAT
GGGCGTGCCGAAATGGCTGATTTTTGGGCCTTGCTGACCAACGGCCACGTGTGGGTGCAATGGCCGCATACCGTCACCGC
AGCCATGGTCACGGCGGCATTTTTCGTTTTGGGCATTAGCGCATGGCAATTGCGCAAACAACCCAAGCCTGCCGATCGCC
TGATTTTTCAGCGCTCATTCAAATTGGCCTTGGGCTATGCCTTGGTTTCAACAATTTTGGTGATGGTGGTCGGGCATAAT
CAAGCTCAATACATGATCAAAGTGCAACCAATGAAAATGGCCGCCGCCGAAGCATTGTGGGAAACCGCTGATCCCGCGCC
GATGTCGTTGTTTACGGTGGCCGATGTGCCCGAACAACGCGATCGCTTCGTGGTCAAAGTTCCAGGTTTGCTGAGCTTTT
TGGCCTACAACCGCTTTGATGGCGAAGTCAAAGGCATCAAAGATCTCCAAGCTGAATTTGAACAAACCTACGGCCCGGGC
AATTACACCCCCGATGTCTTTATGACCTACTGGATGTTTCGGATTATGGTTGGCTCAGGCATGGCGATGTTTGGTTTGGC
GATCATTGGCCTGTTTTTCGTGTTGCGCAAGCGCTTGAACTTCCCTAATTGGTATTTGTGGTTCATGACTTTGGCGCTTA
GTTTGCCCTATATCGCCAACGCCAGCGGCTGGATTTTCACCGAAATGGGCCGCCAACCATGGATCGTCTATGGCTTGCTG
CGCACCAGCGATGGGGTTTCGACGGCAGTTTCTGGCGGCAGCGTGCTGACCTCGTTAATTGGGTTTAGTTTGATCTATCT
GGTCTTGATTGGCGTGATGGTCTTTTTGATCGTGCGCGAAGCCAATCATATTCCCGATGCTAGCCCTGCGACGGTCGAAG
CTGATTTAGCGCTCTAA

Upstream 100 bases:

>100_bases
AATTGGATACCATTTAACGAGTGCATGTTGACTACGACCACCTAGCCAGCAAGCATCTGCGGCAGACATTCCTAAAATCC
ATGCTCAAGGAGTACGTCGT

Downstream 100 bases:

>100_bases
GCTGAAAGGATGGTCTGCCATGGATCTGAATAGTATCTGGTTTGTGCTGGTAGCGGTGCTGTTTATTGGCTTTTTCATCC
TCGAAGGCTTCGATTATGGC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MDALILARWQFAVTTVYHFLFVPLTIGLSFFVALLQTIYYRTGDITYKRMTKFWGHLFLINFAIGVATGIVQEFQFGMNW
SEYSRFVGDIFGAPLAIEALMAFFIESTFLGIWIFGWDRIPKLAHLASIWLVAIATMLSSLWILIANSFMHQPVGYVLRN
GRAEMADFWALLTNGHVWVQWPHTVTAAMVTAAFFVLGISAWQLRKQPKPADRLIFQRSFKLALGYALVSTILVMVVGHN
QAQYMIKVQPMKMAAAEALWETADPAPMSLFTVADVPEQRDRFVVKVPGLLSFLAYNRFDGEVKGIKDLQAEFEQTYGPG
NYTPDVFMTYWMFRIMVGSGMAMFGLAIIGLFFVLRKRLNFPNWYLWFMTLALSLPYIANASGWIFTEMGRQPWIVYGLL
RTSDGVSTAVSGGSVLTSLIGFSLIYLVLIGVMVFLIVREANHIPDASPATVEADLAL

Sequences:

>Translated_458_residues
MDALILARWQFAVTTVYHFLFVPLTIGLSFFVALLQTIYYRTGDITYKRMTKFWGHLFLINFAIGVATGIVQEFQFGMNW
SEYSRFVGDIFGAPLAIEALMAFFIESTFLGIWIFGWDRIPKLAHLASIWLVAIATMLSSLWILIANSFMHQPVGYVLRN
GRAEMADFWALLTNGHVWVQWPHTVTAAMVTAAFFVLGISAWQLRKQPKPADRLIFQRSFKLALGYALVSTILVMVVGHN
QAQYMIKVQPMKMAAAEALWETADPAPMSLFTVADVPEQRDRFVVKVPGLLSFLAYNRFDGEVKGIKDLQAEFEQTYGPG
NYTPDVFMTYWMFRIMVGSGMAMFGLAIIGLFFVLRKRLNFPNWYLWFMTLALSLPYIANASGWIFTEMGRQPWIVYGLL
RTSDGVSTAVSGGSVLTSLIGFSLIYLVLIGVMVFLIVREANHIPDASPATVEADLAL
>Mature_458_residues
MDALILARWQFAVTTVYHFLFVPLTIGLSFFVALLQTIYYRTGDITYKRMTKFWGHLFLINFAIGVATGIVQEFQFGMNW
SEYSRFVGDIFGAPLAIEALMAFFIESTFLGIWIFGWDRIPKLAHLASIWLVAIATMLSSLWILIANSFMHQPVGYVLRN
GRAEMADFWALLTNGHVWVQWPHTVTAAMVTAAFFVLGISAWQLRKQPKPADRLIFQRSFKLALGYALVSTILVMVVGHN
QAQYMIKVQPMKMAAAEALWETADPAPMSLFTVADVPEQRDRFVVKVPGLLSFLAYNRFDGEVKGIKDLQAEFEQTYGPG
NYTPDVFMTYWMFRIMVGSGMAMFGLAIIGLFFVLRKRLNFPNWYLWFMTLALSLPYIANASGWIFTEMGRQPWIVYGLL
RTSDGVSTAVSGGSVLTSLIGFSLIYLVLIGVMVFLIVREANHIPDASPATVEADLAL

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=508, Percent_Identity=38.1889763779528, Blast_Score=326, Evalue=2e-90,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=39.5256916996047, Blast_Score=320, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51637; Mature: 51637

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALILARWQFAVTTVYHFLFVPLTIGLSFFVALLQTIYYRTGDITYKRMTKFWGHLFLI
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAIEALMAFFIESTFLGIWIFGWDRI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECHHHH
PKLAHLASIWLVAIATMLSSLWILIANSFMHQPVGYVLRNGRAEMADFWALLTNGHVWVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHCCEEEEE
WPHTVTAAMVTAAFFVLGISAWQLRKQPKPADRLIFQRSFKLALGYALVSTILVMVVGHN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QAQYMIKVQPMKMAAAEALWETADPAPMSLFTVADVPEQRDRFVVKVPGLLSFLAYNRFD
CCEEEEEECHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHCCC
GEVKGIKDLQAEFEQTYGPGNYTPDVFMTYWMFRIMVGSGMAMFGLAIIGLFFVLRKRLN
CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
FPNWYLWFMTLALSLPYIANASGWIFTEMGRQPWIVYGLLRTSDGVSTAVSGGSVLTSLI
CCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCHHHCCCHHHHHHHH
GFSLIYLVLIGVMVFLIVREANHIPDASPATVEADLAL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
>Mature Secondary Structure
MDALILARWQFAVTTVYHFLFVPLTIGLSFFVALLQTIYYRTGDITYKRMTKFWGHLFLI
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAIEALMAFFIESTFLGIWIFGWDRI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECHHHH
PKLAHLASIWLVAIATMLSSLWILIANSFMHQPVGYVLRNGRAEMADFWALLTNGHVWVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHCCEEEEE
WPHTVTAAMVTAAFFVLGISAWQLRKQPKPADRLIFQRSFKLALGYALVSTILVMVVGHN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QAQYMIKVQPMKMAAAEALWETADPAPMSLFTVADVPEQRDRFVVKVPGLLSFLAYNRFD
CCEEEEEECHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHCCC
GEVKGIKDLQAEFEQTYGPGNYTPDVFMTYWMFRIMVGSGMAMFGLAIIGLFFVLRKRLN
CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
FPNWYLWFMTLALSLPYIANASGWIFTEMGRQPWIVYGLLRTSDGVSTAVSGGSVLTSLI
CCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCHHHCCCHHHHHHHH
GFSLIYLVLIGVMVFLIVREANHIPDASPATVEADLAL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]