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The map label for this gene is cydB [H]

Identifier: 159900275

GI number: 159900275

Start: 4726860

End: 4727873

Strand: Reverse

Name: cydB [H]

Synonym: Haur_3758

Alternate gene names: 159900275

Gene position: 4727873-4726860 (Counterclockwise)

Preceding gene: 159900276

Following gene: 159900274

Centisome position: 74.49

GC content: 50.89

Gene sequence:

>1014_bases
ATGGATCTGAATAGTATCTGGTTTGTGCTGGTAGCGGTGCTGTTTATTGGCTTTTTCATCCTCGAAGGCTTCGATTATGG
CGTGGGCATGCTCTTGCCATGGCTTGGCCGCGACGATCAAGAGCGCCGCGTGGTTATCAACACAATTGGGCCATTTTGGG
ATGGCAACGAGGTTTGGGTGCTGACCGCAGGTGGGGCGATTTTCGCGGCCTTTCCTGAATGGTATGCCACCTTGTTTAGT
GGTTTCTATTTGGCCTTGTTTTTGATGCTCTGTGCCTTGATTGTACGGGCGGTGGCCTTTGAATATCGTAGCAAAGTCGC
CGACCCACGTTGGCGCACAACCTGGGATTGGGTGATTTTCTTCGGCAGCGCTGTGCCGGCCTTGCTCTGGGGCGTGGCCT
TGGGCAATTTGTTGCGCGGCGTGCCAATTGATGCCGATAAGCAATTTGTGGGCAATTTCTTTGATTTGCTGAATCCGTAT
GCCTTGCTGGTGGGCTTGACCACGCTGAGCATGTTTTTGCTGCATGGAGCCTTATTTCTCAATTTGAAAACCACCGACGA
GCTGCGCGAGCGTTCGTTGAAATTAGCGCAACGCATCGGGCCAGTAGCCACAGTGCTGATTTTGGCATTTATTGTGGCAA
CCTACAGCGCGACCGATACATTTAGTCGGCTGGGCGTAAACCCAGGGATTATTCCAGTGTCGGCCTTGTTGACCTTGCTG
GGTGCTGGGTGGTTTGTGCATACCAAGCAAACAGGTTGGGCCTTTATCATGACCTGCCTAACGATTGGGCTTTCAGTGAT
CACGATCTTTATGGCGTTGTTCCCACGGGTGATGATTTCGAGCCTCGACCCGAATTGGAGCCTAACGATTTACAATGCCT
CATCAAGCCCCTACACGCTCAAAATTATGAGTTTTGTCGCCTTGATTTTTGTACCGATTGTCTTGGGCTATCAGGCTTGG
ACCTATTGGGTTTTCCGTCAACGGGTTAGCACAAAATCGAAATTGACCTATTGA

Upstream 100 bases:

>100_bases
ATGGTCTTTTTGATCGTGCGCGAAGCCAATCATATTCCCGATGCTAGCCCTGCGACGGTCGAAGCTGATTTAGCGCTCTA
AGCTGAAAGGATGGTCTGCC

Downstream 100 bases:

>100_bases
GTAAAGGGGTTGGGGATCAGGGGCCAGTTAAGTTTTGATCCACGAAGGACACGAAGAGTACGAAGGATTGAAACCGCGAA
GATCGCGAAGGGAGATTTGG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MDLNSIWFVLVAVLFIGFFILEGFDYGVGMLLPWLGRDDQERRVVINTIGPFWDGNEVWVLTAGGAIFAAFPEWYATLFS
GFYLALFLMLCALIVRAVAFEYRSKVADPRWRTTWDWVIFFGSAVPALLWGVALGNLLRGVPIDADKQFVGNFFDLLNPY
ALLVGLTTLSMFLLHGALFLNLKTTDELRERSLKLAQRIGPVATVLILAFIVATYSATDTFSRLGVNPGIIPVSALLTLL
GAGWFVHTKQTGWAFIMTCLTIGLSVITIFMALFPRVMISSLDPNWSLTIYNASSSPYTLKIMSFVALIFVPIVLGYQAW
TYWVFRQRVSTKSKLTY

Sequences:

>Translated_337_residues
MDLNSIWFVLVAVLFIGFFILEGFDYGVGMLLPWLGRDDQERRVVINTIGPFWDGNEVWVLTAGGAIFAAFPEWYATLFS
GFYLALFLMLCALIVRAVAFEYRSKVADPRWRTTWDWVIFFGSAVPALLWGVALGNLLRGVPIDADKQFVGNFFDLLNPY
ALLVGLTTLSMFLLHGALFLNLKTTDELRERSLKLAQRIGPVATVLILAFIVATYSATDTFSRLGVNPGIIPVSALLTLL
GAGWFVHTKQTGWAFIMTCLTIGLSVITIFMALFPRVMISSLDPNWSLTIYNASSSPYTLKIMSFVALIFVPIVLGYQAW
TYWVFRQRVSTKSKLTY
>Mature_337_residues
MDLNSIWFVLVAVLFIGFFILEGFDYGVGMLLPWLGRDDQERRVVINTIGPFWDGNEVWVLTAGGAIFAAFPEWYATLFS
GFYLALFLMLCALIVRAVAFEYRSKVADPRWRTTWDWVIFFGSAVPALLWGVALGNLLRGVPIDADKQFVGNFFDLLNPY
ALLVGLTTLSMFLLHGALFLNLKTTDELRERSLKLAQRIGPVATVLILAFIVATYSATDTFSRLGVNPGIIPVSALLTLL
GAGWFVHTKQTGWAFIMTCLTIGLSVITIFMALFPRVMISSLDPNWSLTIYNASSSPYTLKIMSFVALIFVPIVLGYQAW
TYWVFRQRVSTKSKLTY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=368, Percent_Identity=42.3913043478261, Blast_Score=274, Evalue=5e-75,
Organism=Escherichia coli, GI1787213, Length=366, Percent_Identity=39.344262295082, Blast_Score=243, Evalue=9e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37799; Mature: 37799

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNSIWFVLVAVLFIGFFILEGFDYGVGMLLPWLGRDDQERRVVINTIGPFWDGNEVWV
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEE
LTAGGAIFAAFPEWYATLFSGFYLALFLMLCALIVRAVAFEYRSKVADPRWRTTWDWVIF
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FGSAVPALLWGVALGNLLRGVPIDADKQFVGNFFDLLNPYALLVGLTTLSMFLLHGALFL
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
NLKTTDELRERSLKLAQRIGPVATVLILAFIVATYSATDTFSRLGVNPGIIPVSALLTLL
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHH
GAGWFVHTKQTGWAFIMTCLTIGLSVITIFMALFPRVMISSLDPNWSLTIYNASSSPYTL
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEH
KIMSFVALIFVPIVLGYQAWTYWVFRQRVSTKSKLTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDLNSIWFVLVAVLFIGFFILEGFDYGVGMLLPWLGRDDQERRVVINTIGPFWDGNEVWV
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEE
LTAGGAIFAAFPEWYATLFSGFYLALFLMLCALIVRAVAFEYRSKVADPRWRTTWDWVIF
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FGSAVPALLWGVALGNLLRGVPIDADKQFVGNFFDLLNPYALLVGLTTLSMFLLHGALFL
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
NLKTTDELRERSLKLAQRIGPVATVLILAFIVATYSATDTFSRLGVNPGIIPVSALLTLL
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHH
GAGWFVHTKQTGWAFIMTCLTIGLSVITIFMALFPRVMISSLDPNWSLTIYNASSSPYTL
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEH
KIMSFVALIFVPIVLGYQAWTYWVFRQRVSTKSKLTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]