| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900173
Identifier: 159900173
GI number: 159900173
Start: 4597467
End: 4598468
Strand: Reverse
Name: 159900173
Synonym: Haur_3656
Alternate gene names: NA
Gene position: 4598468-4597467 (Counterclockwise)
Preceding gene: 159900174
Following gene: 159900172
Centisome position: 72.46
GC content: 32.34
Gene sequence:
>1002_bases ATGTATTGTCCAAATTGTTATATCAAATTCCCATCAGGTGAAACCCGCTGCCCTAAATGTGGTGGGCCTGGTGTACCAAG AAACACTCAATCACCAAAATCCCAGGTGAACTCAGTTCGTCGTACAACTGTGCCCCTAAACGGCAAACAACGTTGGAGTC TTTTTCTGAGTAGCCTTTTTGGGTTATTACTGCTTGCAATACCAAATATTATTATTTTTGGTATTCTTTTACCAATGCAA TTTAATTGGTTAGTATTTACGCTAGGTATTGGTGTTATAATTATTGGTATTTATAAAATCTCTAGTTTGCATGAATTAAT TGACGGAAATTCCTATATTAAGTCATTCCAACTCATTAGGGTTGATCGTGTTCAAAATAGCAGAACTTACTACTTTGGTT TCTTTAAAGATCTTGGCTGTGTGACAATTGATGCTGAGATGTTTGATAACGCTAAGTTAGGAGCAATATATCAGATACAG TATAGTCCAAGAAGTAAAATCGTTTGGAGCATGAAAATTGAAGATGAAAAACCAGCTAACATAATTTCTGATATAAAACC AAATCATCAGGAAAATATAAGTGATAAACAAAGAAAAATAACATTTATTCAGCGAAAAGAATTATTATTTATGCTGATGA GACATAGTATTCTTGTTTCTTTGTATCCAATATATGTTATTTTTAATCCAGCTTTAGCGTTATCTGATTTAAATGTATTT ATAATTATTATATATATCTTTATTTTTTATAACCTAGGAATGATTGTTCTTGCTCTATTAGATTTGATTTCGAATACGAA TGAGCTTGACAATGATCGATTGATTCGGGTGGAATTTACCTATGGCCGAAGAGGGAAACGTTTTTATGCAATATTTGAAG GCAATAATCGCCTGAATATTAATGAGCAACAGTATATAGATCTGGTTGAAAATCAAATATATCAAATTACGTATAGTCGA TGGACTAGAAAGTTATGGGAGGCACAATTACTCGATTCTTAA
Upstream 100 bases:
>100_bases GCGTGTATCTAGTAGCTAAAATAGGCCGATTAATCTTTGATCTTTGGCGGAGTAAACGCGAAAAGTAAGTTCTAGCATGT GAGAACGATGGAACAGAGTT
Downstream 100 bases:
>100_bases ACCTAAATTATTGGTTAAGCTAATTATTGATGCGATGAGCGAAGGAGTAAAATGATGAATTGCCCAAATTGTTATACCAA AATTCCTGATAATCAAGCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MYCPNCYIKFPSGETRCPKCGGPGVPRNTQSPKSQVNSVRRTTVPLNGKQRWSLFLSSLFGLLLLAIPNIIIFGILLPMQ FNWLVFTLGIGVIIIGIYKISSLHELIDGNSYIKSFQLIRVDRVQNSRTYYFGFFKDLGCVTIDAEMFDNAKLGAIYQIQ YSPRSKIVWSMKIEDEKPANIISDIKPNHQENISDKQRKITFIQRKELLFMLMRHSILVSLYPIYVIFNPALALSDLNVF IIIIYIFIFYNLGMIVLALLDLISNTNELDNDRLIRVEFTYGRRGKRFYAIFEGNNRLNINEQQYIDLVENQIYQITYSR WTRKLWEAQLLDS
Sequences:
>Translated_333_residues MYCPNCYIKFPSGETRCPKCGGPGVPRNTQSPKSQVNSVRRTTVPLNGKQRWSLFLSSLFGLLLLAIPNIIIFGILLPMQ FNWLVFTLGIGVIIIGIYKISSLHELIDGNSYIKSFQLIRVDRVQNSRTYYFGFFKDLGCVTIDAEMFDNAKLGAIYQIQ YSPRSKIVWSMKIEDEKPANIISDIKPNHQENISDKQRKITFIQRKELLFMLMRHSILVSLYPIYVIFNPALALSDLNVF IIIIYIFIFYNLGMIVLALLDLISNTNELDNDRLIRVEFTYGRRGKRFYAIFEGNNRLNINEQQYIDLVENQIYQITYSR WTRKLWEAQLLDS >Mature_333_residues MYCPNCYIKFPSGETRCPKCGGPGVPRNTQSPKSQVNSVRRTTVPLNGKQRWSLFLSSLFGLLLLAIPNIIIFGILLPMQ FNWLVFTLGIGVIIIGIYKISSLHELIDGNSYIKSFQLIRVDRVQNSRTYYFGFFKDLGCVTIDAEMFDNAKLGAIYQIQ YSPRSKIVWSMKIEDEKPANIISDIKPNHQENISDKQRKITFIQRKELLFMLMRHSILVSLYPIYVIFNPALALSDLNVF IIIIYIFIFYNLGMIVLALLDLISNTNELDNDRLIRVEFTYGRRGKRFYAIFEGNNRLNINEQQYIDLVENQIYQITYSR WTRKLWEAQLLDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38732; Mature: 38732
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYCPNCYIKFPSGETRCPKCGGPGVPRNTQSPKSQVNSVRRTTVPLNGKQRWSLFLSSLF CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHH GLLLLAIPNIIIFGILLPMQFNWLVFTLGIGVIIIGIYKISSLHELIDGNSYIKSFQLIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEE VDRVQNSRTYYFGFFKDLGCVTIDAEMFDNAKLGAIYQIQYSPRSKIVWSMKIEDEKPAN EEECCCCCEEEEEEECCCCEEEEEHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCHH IISDIKPNHQENISDKQRKITFIQRKELLFMLMRHSILVSLYPIYVIFNPALALSDLNVF HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHCCHHH IIIIYIFIFYNLGMIVLALLDLISNTNELDNDRLIRVEFTYGRRGKRFYAIFEGNNRLNI HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCEECC NEQQYIDLVENQIYQITYSRWTRKLWEAQLLDS CHHHHHHHHHHHHEEEHHHHHHHHHHHHHHCCC >Mature Secondary Structure MYCPNCYIKFPSGETRCPKCGGPGVPRNTQSPKSQVNSVRRTTVPLNGKQRWSLFLSSLF CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHH GLLLLAIPNIIIFGILLPMQFNWLVFTLGIGVIIIGIYKISSLHELIDGNSYIKSFQLIR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEE VDRVQNSRTYYFGFFKDLGCVTIDAEMFDNAKLGAIYQIQYSPRSKIVWSMKIEDEKPAN EEECCCCCEEEEEEECCCCEEEEEHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCHH IISDIKPNHQENISDKQRKITFIQRKELLFMLMRHSILVSLYPIYVIFNPALALSDLNVF HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHCCHHH IIIIYIFIFYNLGMIVLALLDLISNTNELDNDRLIRVEFTYGRRGKRFYAIFEGNNRLNI HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCEECC NEQQYIDLVENQIYQITYSRWTRKLWEAQLLDS CHHHHHHHHHHHHEEEHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA