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The map label for this gene is arnC [H]

Identifier: 159900141

GI number: 159900141

Start: 4555045

End: 4555782

Strand: Reverse

Name: arnC [H]

Synonym: Haur_3624

Alternate gene names: 159900141

Gene position: 4555782-4555045 (Counterclockwise)

Preceding gene: 159900145

Following gene: 159900140

Centisome position: 71.78

GC content: 53.66

Gene sequence:

>738_bases
ATGGATTCGCAGCCCGATCTTTCGATTGTTTTTCCGGCCTATAACGAGGCTGAAAATATTGAAGCCAGCATTCTCGATGC
CATTCAAGTGCTCAACCAGCTTGGCCTGAACGGCGAGATTGTGGTGGTCAATGATGGCAGCCACGATCAGACTGCCAACG
TTGTGCGCGATGTGGCAACCCGCCATCACCAGGTGCATTTAATCAATCACGACATGAACCAAGGCTATGGCGCAGCGGTT
TGGACAGGCCTAACCAACGCCATGGGCAAATTGGTTTTTTTCTGCGATGCAGATCGTCAATTTGATTTGGCTGAATTGGA
AAAATTGGTGGCGCGTCGCCATCATGCGCCGTTGGTGGTGGGCTATCGTGCACCGCGCCGCGACCCAGTGTTGCGCCGCT
TGAATGGCTGGGGTTGGAGCCATTTGGTGACGCTTTTGTTTGGCTACACCGCTCGCGATATCGATTGCGCCTTCAAAATG
CTCGATCAACGGGTGATCGATACGCTGCGCCAACAGGTGCAATCACGCGGGGCCACCTTTAGCGCTGAATTATTAGTGCG
GGCCAAACGCGCAGGTTTTCAGATTGCCGAAGTGGCGATTATTGGCCATCGCCCACGGGTTGCAGGCAAGCCAACTGGAG
CCAAATTGAGCGTTATTTTGCGGGCGTTTCGTGAATTATTGCAGCTTTATCGCGTGCTCAATCGCGAGAGCCGCACAACC
AAGCCCGCCATCCTCTAA

Upstream 100 bases:

>100_bases
GATTTTTTCACACGGCTGGCCGATAGTAAAGCCAAGCAAACATTCTAGTGCTATGACAAGCACCGACCACCAATCGCTCG
TGTGTTTAGGAGGCCCGCCA

Downstream 100 bases:

>100_bases
ATCGAGATTAAGCCAGTTGTGTACCAATTGCGCTGTGCTGTTTACACTCAAGTTTGCGCAAGCCACATCAATGGAGATCG
AAGCGGTACGTCATGGCTAT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MDSQPDLSIVFPAYNEAENIEASILDAIQVLNQLGLNGEIVVVNDGSHDQTANVVRDVATRHHQVHLINHDMNQGYGAAV
WTGLTNAMGKLVFFCDADRQFDLAELEKLVARRHHAPLVVGYRAPRRDPVLRRLNGWGWSHLVTLLFGYTARDIDCAFKM
LDQRVIDTLRQQVQSRGATFSAELLVRAKRAGFQIAEVAIIGHRPRVAGKPTGAKLSVILRAFRELLQLYRVLNRESRTT
KPAIL

Sequences:

>Translated_245_residues
MDSQPDLSIVFPAYNEAENIEASILDAIQVLNQLGLNGEIVVVNDGSHDQTANVVRDVATRHHQVHLINHDMNQGYGAAV
WTGLTNAMGKLVFFCDADRQFDLAELEKLVARRHHAPLVVGYRAPRRDPVLRRLNGWGWSHLVTLLFGYTARDIDCAFKM
LDQRVIDTLRQQVQSRGATFSAELLVRAKRAGFQIAEVAIIGHRPRVAGKPTGAKLSVILRAFRELLQLYRVLNRESRTT
KPAIL
>Mature_245_residues
MDSQPDLSIVFPAYNEAENIEASILDAIQVLNQLGLNGEIVVVNDGSHDQTANVVRDVATRHHQVHLINHDMNQGYGAAV
WTGLTNAMGKLVFFCDADRQFDLAELEKLVARRHHAPLVVGYRAPRRDPVLRRLNGWGWSHLVTLLFGYTARDIDCAFKM
LDQRVIDTLRQQVQSRGATFSAELLVRAKRAGFQIAEVAIIGHRPRVAGKPTGAKLSVILRAFRELLQLYRVLNRESRTT
KPAIL

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=210, Percent_Identity=26.1904761904762, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI7019323, Length=214, Percent_Identity=27.5700934579439, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1788588, Length=166, Percent_Identity=27.710843373494, Blast_Score=71, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI25146207, Length=220, Percent_Identity=28.1818181818182, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71999402, Length=213, Percent_Identity=27.2300469483568, Blast_Score=77, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6325029, Length=228, Percent_Identity=28.0701754385965, Blast_Score=87, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24585265, Length=202, Percent_Identity=27.2277227722772, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24582769, Length=215, Percent_Identity=27.906976744186, Blast_Score=78, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 27464; Mature: 27464

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSQPDLSIVFPAYNEAENIEASILDAIQVLNQLGLNGEIVVVNDGSHDQTANVVRDVAT
CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
RHHQVHLINHDMNQGYGAAVWTGLTNAMGKLVFFCDADRQFDLAELEKLVARRHHAPLVV
HCCEEEEEECCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCEEE
GYRAPRRDPVLRRLNGWGWSHLVTLLFGYTARDIDCAFKMLDQRVIDTLRQQVQSRGATF
ECCCCCCCHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SAELLVRAKRAGFQIAEVAIIGHRPRVAGKPTGAKLSVILRAFRELLQLYRVLNRESRTT
HHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
KPAIL
CCCCC
>Mature Secondary Structure
MDSQPDLSIVFPAYNEAENIEASILDAIQVLNQLGLNGEIVVVNDGSHDQTANVVRDVAT
CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
RHHQVHLINHDMNQGYGAAVWTGLTNAMGKLVFFCDADRQFDLAELEKLVARRHHAPLVV
HCCEEEEEECCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCEEE
GYRAPRRDPVLRRLNGWGWSHLVTLLFGYTARDIDCAFKMLDQRVIDTLRQQVQSRGATF
ECCCCCCCHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SAELLVRAKRAGFQIAEVAIIGHRPRVAGKPTGAKLSVILRAFRELLQLYRVLNRESRTT
HHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
KPAIL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA