| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is yrrC [H]
Identifier: 159900130
GI number: 159900130
Start: 4541841
End: 4544000
Strand: Direct
Name: yrrC [H]
Synonym: Haur_3613
Alternate gene names: 159900130
Gene position: 4541841-4544000 (Clockwise)
Preceding gene: 159900129
Following gene: 159900131
Centisome position: 71.56
GC content: 52.41
Gene sequence:
>2160_bases ATGGATCAACTAACAGGCAACCTAGAACGCATCACCTATCGCTCGGATGAAACGGGCTATACCGTGGCGCGTTTGAAAGC CCAAGGCCAGCGCAGCGTGATCACAATTGTTGGGCGTTTGCCCGATGTGCAAGTTGGCGAACAGTTGCAACTTGAAGGCC AATGGATCGAGCATCGAACCCATGGCCGCCAATTTGAAGTTGCTAGCTATCAAACTGCCCGGCCAACTGGCAACGAAAGT ATTGTGCGCTACTTGGCATCGGGCTTATTGCCAGGCATTGGTCCAGTCAATGCCCAACGCATCGCTGATACCTTTGGTGA AGCCACGCTCGATGTACTTGATACTATGCCCGAACGCTTACGCGAAGTAAAAGGCTTAGGCACGAAGAAAATTGCCGCAA TTATCGTAGCCTGGCAAGAACAACGTGCAATCAAAGCCTTGCTCGAATTGGGCCAAGCCGTTGGGTTAACGACAGGTTTA GCCTTACGCATTTTTCGGCACTATGGCGAGCAGGCTAGCCAGATTGTGCAACACGACCCTTATCGTCTAGCCTTAGAAAT TGAAGGCATTGGCTTTCCGACTGCCGACCACATTGCCCAAGCTTTGGGCGTAGCGCGAGATGCTCCCAGTCGGGTGATTG CTGGATTGCGCTATACCCTCAGCATGGTTGCCAACACCGAAGGCCATTGCGCTCTGCCCCAAATCGAGTTAATCGCGCAA ACTCAAACCATCCTAGAATTACCCCATGAGCTGATTGCCGAACAATTGGCGGTGGCAACCGAATCAGTGTTATTGGTGCT TGATGGCGATCTAGTCTATTTACCAGCCTATTATCATGCTGAAACCGAGTTAGCACATAACTTGCAGCGCTTGCAACAGC TCCCCAGTGCAATCCAATTGCGCTTCAAGCAGCAAAGCGATGCGATTATTATGCGCCAATTGCATAATGCGAGCTTCGAT TTGAGCCAACGCCAAGCCGAAGCCGTGCTGGCCGTGCTCCGCTCCAAAGTGGTGTTGCTAACTGGCGGGCCTGGCACAGG CAAAACCACCACAGTCCGCGCAATTTTGGCCTTGCTCCAACAAGTTGGGTTACGCACAATTTTGGCGGCTCCAACCGGAC GCGCCGCCCGTCGTCTCGCCGAAACCACCAATCATCCAGCTGCCACAATTCATCGCACCCTCGAATATAGCGGCGGCGCT GGCAATGACCGCTGGGGCCGCAACGAACATGCCCAACTAGTTGCCGATTTAGTGGTCATCGACGAAACCTCAATGCTCGA CATTGTGCTGGCCCATCATATGGTCAAGGCCTTGGCTCCAACCACCCATTTGCTCTTGGTTGGCGATCCTGATCAGTTGC CAGCAGTTGGGCCAGGCGCTGTATTGCGCGATTTGTTGGCTAGCAACCGCATCACAACCGTCCATTTGGATACGATTTTT CGCCAAGCCGCTGATAGCCAAATTATCACCAATGCCCATGCAATCAATCAAGGCCAGTTACCCAGCGTCAATCAAGGTGA TTTCTATTGGTTTCCGCGCAGTAACCCAGCCGAATGCGGTGCGATGATTGTGGATTTGTTGACTACCCGTATTCCACGCC AATTCCCGCAATTTGATCCTCTGCGCGATATTCAGGTGTTGGCAGCAACCCATCGGGGCGCGGCAGGCGTGCTCGAATTA AACAGCCAACTGCAAGCAGCACTCAACCCGCCAAACACCACTCGCCAAGAAGCCACGATTGCTGGCACGCTCTTTCGCGA AGGTGATCGGGTTATTCAAACCCGTAACAATTATGATCTCGATGTCAGCAATGGCGATTTAGGCCTGATTCAAACGATTG ATCTCGAAGAACGCACGGTTAGCGTTTATTTTGACGATACTCGCAACGTCGTCTATCAGTGGAATGAGTTTGATGAAGTG GCCTTGGCGTATGCAATTAGCGTACATAAAGCCCAAGGCTCAGAATATCCGGTGGTGATTGTGCCAATGTTGCGTTATTA CAATGTGCTGCTCAACCGACCGTTGCTGTATACCGCCATCACTCGCGCTCGTCAATTGGTGATTCTGACTGGCGATTGGC AGGCCGTCGAATTTGCGATTGCCCAACGCCGCAGTGGGCAGCGCATCACGGGGTTAAGCCAACGCTTTGGGATGCATTGA
Upstream 100 bases:
>100_bases ACCTTTTGATTTCTGACTTTTGATTTCTGACTTTTGATTTCTGACTTTTGATTTCTGACTTTTGATTTCTGACTTTTGAT TTCTGACTTTTGACGTAACT
Downstream 100 bases:
>100_bases TGGATGTCTCGCAGGATCAAGCGCTGCGCTGTGGAAGTGTCAAACATCCTACACTTAAATATTAGCCTTTTATGCTACTC TATGCACAGCATATTGTGAG
Product: RecD/TraA family helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 719; Mature: 719
Protein sequence:
>719_residues MDQLTGNLERITYRSDETGYTVARLKAQGQRSVITIVGRLPDVQVGEQLQLEGQWIEHRTHGRQFEVASYQTARPTGNES IVRYLASGLLPGIGPVNAQRIADTFGEATLDVLDTMPERLREVKGLGTKKIAAIIVAWQEQRAIKALLELGQAVGLTTGL ALRIFRHYGEQASQIVQHDPYRLALEIEGIGFPTADHIAQALGVARDAPSRVIAGLRYTLSMVANTEGHCALPQIELIAQ TQTILELPHELIAEQLAVATESVLLVLDGDLVYLPAYYHAETELAHNLQRLQQLPSAIQLRFKQQSDAIIMRQLHNASFD LSQRQAEAVLAVLRSKVVLLTGGPGTGKTTTVRAILALLQQVGLRTILAAPTGRAARRLAETTNHPAATIHRTLEYSGGA GNDRWGRNEHAQLVADLVVIDETSMLDIVLAHHMVKALAPTTHLLLVGDPDQLPAVGPGAVLRDLLASNRITTVHLDTIF RQAADSQIITNAHAINQGQLPSVNQGDFYWFPRSNPAECGAMIVDLLTTRIPRQFPQFDPLRDIQVLAATHRGAAGVLEL NSQLQAALNPPNTTRQEATIAGTLFREGDRVIQTRNNYDLDVSNGDLGLIQTIDLEERTVSVYFDDTRNVVYQWNEFDEV ALAYAISVHKAQGSEYPVVIVPMLRYYNVLLNRPLLYTAITRARQLVILTGDWQAVEFAIAQRRSGQRITGLSQRFGMH
Sequences:
>Translated_719_residues MDQLTGNLERITYRSDETGYTVARLKAQGQRSVITIVGRLPDVQVGEQLQLEGQWIEHRTHGRQFEVASYQTARPTGNES IVRYLASGLLPGIGPVNAQRIADTFGEATLDVLDTMPERLREVKGLGTKKIAAIIVAWQEQRAIKALLELGQAVGLTTGL ALRIFRHYGEQASQIVQHDPYRLALEIEGIGFPTADHIAQALGVARDAPSRVIAGLRYTLSMVANTEGHCALPQIELIAQ TQTILELPHELIAEQLAVATESVLLVLDGDLVYLPAYYHAETELAHNLQRLQQLPSAIQLRFKQQSDAIIMRQLHNASFD LSQRQAEAVLAVLRSKVVLLTGGPGTGKTTTVRAILALLQQVGLRTILAAPTGRAARRLAETTNHPAATIHRTLEYSGGA GNDRWGRNEHAQLVADLVVIDETSMLDIVLAHHMVKALAPTTHLLLVGDPDQLPAVGPGAVLRDLLASNRITTVHLDTIF RQAADSQIITNAHAINQGQLPSVNQGDFYWFPRSNPAECGAMIVDLLTTRIPRQFPQFDPLRDIQVLAATHRGAAGVLEL NSQLQAALNPPNTTRQEATIAGTLFREGDRVIQTRNNYDLDVSNGDLGLIQTIDLEERTVSVYFDDTRNVVYQWNEFDEV ALAYAISVHKAQGSEYPVVIVPMLRYYNVLLNRPLLYTAITRARQLVILTGDWQAVEFAIAQRRSGQRITGLSQRFGMH >Mature_719_residues MDQLTGNLERITYRSDETGYTVARLKAQGQRSVITIVGRLPDVQVGEQLQLEGQWIEHRTHGRQFEVASYQTARPTGNES IVRYLASGLLPGIGPVNAQRIADTFGEATLDVLDTMPERLREVKGLGTKKIAAIIVAWQEQRAIKALLELGQAVGLTTGL ALRIFRHYGEQASQIVQHDPYRLALEIEGIGFPTADHIAQALGVARDAPSRVIAGLRYTLSMVANTEGHCALPQIELIAQ TQTILELPHELIAEQLAVATESVLLVLDGDLVYLPAYYHAETELAHNLQRLQQLPSAIQLRFKQQSDAIIMRQLHNASFD LSQRQAEAVLAVLRSKVVLLTGGPGTGKTTTVRAILALLQQVGLRTILAAPTGRAARRLAETTNHPAATIHRTLEYSGGA GNDRWGRNEHAQLVADLVVIDETSMLDIVLAHHMVKALAPTTHLLLVGDPDQLPAVGPGAVLRDLLASNRITTVHLDTIF RQAADSQIITNAHAINQGQLPSVNQGDFYWFPRSNPAECGAMIVDLLTTRIPRQFPQFDPLRDIQVLAATHRGAAGVLEL NSQLQAALNPPNTTRQEATIAGTLFREGDRVIQTRNNYDLDVSNGDLGLIQTIDLEERTVSVYFDDTRNVVYQWNEFDEV ALAYAISVHKAQGSEYPVVIVPMLRYYNVLLNRPLLYTAITRARQLVILTGDWQAVEFAIAQRRSGQRITGLSQRFGMH
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=538, Percent_Identity=27.8810408921933, Blast_Score=107, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 79223; Mature: 79223
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQLTGNLERITYRSDETGYTVARLKAQGQRSVITIVGRLPDVQVGEQLQLEGQWIEHRT CCCCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCHHHHHHC HGRQFEVASYQTARPTGNESIVRYLASGLLPGIGPVNAQRIADTFGEATLDVLDTMPERL CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH REVKGLGTKKIAAIIVAWQEQRAIKALLELGQAVGLTTGLALRIFRHYGEQASQIVQHDP HHHHCCCHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC YRLALEIEGIGFPTADHIAQALGVARDAPSRVIAGLRYTLSMVANTEGHCALPQIELIAQ EEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH TQTILELPHELIAEQLAVATESVLLVLDGDLVYLPAYYHAETELAHNLQRLQQLPSAIQL HHHHHHCHHHHHHHHHHHHHCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHCHHHHHH RFKQQSDAIIMRQLHNASFDLSQRQAEAVLAVLRSKVVLLTGGPGTGKTTTVRAILALLQ HHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHH QVGLRTILAAPTGRAARRLAETTNHPAATIHRTLEYSGGAGNDRWGRNEHAQLVADLVVI HCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHEE DETSMLDIVLAHHMVKALAPTTHLLLVGDPDQLPAVGPGAVLRDLLASNRITTVHLDTIF CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHH RQAADSQIITNAHAINQGQLPSVNQGDFYWFPRSNPAECGAMIVDLLTTRIPRQFPQFDP HHHCCCHHEECHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC LRDIQVLAATHRGAAGVLELNSQLQAALNPPNTTRQEATIAGTLFREGDRVIQTRNNYDL CHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCEEE DVSNGDLGLIQTIDLEERTVSVYFDDTRNVVYQWNEFDEVALAYAISVHKAQGSEYPVVI EECCCCEEEEEEECCCCEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEE VPMLRYYNVLLNRPLLYTAITRARQLVILTGDWQAVEFAIAQRRSGQRITGLSQRFGMH EEHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHCCC >Mature Secondary Structure MDQLTGNLERITYRSDETGYTVARLKAQGQRSVITIVGRLPDVQVGEQLQLEGQWIEHRT CCCCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCHHHHHHC HGRQFEVASYQTARPTGNESIVRYLASGLLPGIGPVNAQRIADTFGEATLDVLDTMPERL CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH REVKGLGTKKIAAIIVAWQEQRAIKALLELGQAVGLTTGLALRIFRHYGEQASQIVQHDP HHHHCCCHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC YRLALEIEGIGFPTADHIAQALGVARDAPSRVIAGLRYTLSMVANTEGHCALPQIELIAQ EEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH TQTILELPHELIAEQLAVATESVLLVLDGDLVYLPAYYHAETELAHNLQRLQQLPSAIQL HHHHHHCHHHHHHHHHHHHHCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHCHHHHHH RFKQQSDAIIMRQLHNASFDLSQRQAEAVLAVLRSKVVLLTGGPGTGKTTTVRAILALLQ HHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHH QVGLRTILAAPTGRAARRLAETTNHPAATIHRTLEYSGGAGNDRWGRNEHAQLVADLVVI HCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHEE DETSMLDIVLAHHMVKALAPTTHLLLVGDPDQLPAVGPGAVLRDLLASNRITTVHLDTIF CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEHHHHH RQAADSQIITNAHAINQGQLPSVNQGDFYWFPRSNPAECGAMIVDLLTTRIPRQFPQFDP HHHCCCHHEECHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC LRDIQVLAATHRGAAGVLELNSQLQAALNPPNTTRQEATIAGTLFREGDRVIQTRNNYDL CHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCEEE DVSNGDLGLIQTIDLEERTVSVYFDDTRNVVYQWNEFDEVALAYAISVHKAQGSEYPVVI EECCCCEEEEEEECCCCEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEE VPMLRYYNVLLNRPLLYTAITRARQLVILTGDWQAVEFAIAQRRSGQRITGLSQRFGMH EEHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]