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The map label for this gene is ykfC [H]

Identifier: 159900109

GI number: 159900109

Start: 4521699

End: 4522736

Strand: Reverse

Name: ykfC [H]

Synonym: Haur_3592

Alternate gene names: 159900109

Gene position: 4522736-4521699 (Counterclockwise)

Preceding gene: 159900110

Following gene: 159900108

Centisome position: 71.26

GC content: 51.64

Gene sequence:

>1038_bases
ATGCATCCACTTCAAACCACGATTGATCAGTATGCAGCCCAATTTGATCGTCGGCGCATGACGATTTTAGCTGCCCACGT
CGAAGAAGACAATGGAACGGTGCTCCGTGGTCGGGTGTTGGATCGCAGCCAGCATGCGGCGTTGTTGGCTTTATTGCCAA
ATGTGCGCGATGAATTGATTGTGCTGCGCGAACAGCCGGAGCATGGCTTTGCAACCGTTACTTTTGGGGTATTAGATGTG
CGCTGGCAGGCTACTCGCGATTCGGAATTGGTGACTGAGGCCAGTTTTGGCGAAGGCTTAGAGGTACTGGCCCACGAGCA
TGAATGGTTGCAAGTAATTACCAGCGATGGTTATTTGGGTTGGGTACGGCGCAATGGTGTTGTGCTGCACGAGCAGCCAA
GCACCTATCGAAGTGCTGCAACCCACGTTGTGACCAGCCGTTGGTTGCCATTGTGGGGTTTAGAGGGCGACCAAATTGGC
TTGTTGCCATGGGGCATTCGGCTTGAAATTGACGAATTTCGTGATGGCAAAGCCTTTATGCGCTCACCTGCAGGCCTGCC
AGGTTGGCTCGAAGCCGATTCATTAACGCCCGTTGAAGATTTGTGTTCGGTTGATAGCGCTGGTATCGAGGATATGTTGC
AAGCAATTCGCCAATTGATTGGTGTGCCCTATTTGTGGGGTGGCACAACTAGTTTTGGTTTCGATTGCTCAGGTTTGGCT
CAGGCTGCCTATCGTTGGCTGGGTGTGCAATTGCCACGCGACGCTGATCAACAATCGCAAATTGGTCGTTTAATTAGCCG
TGAGCAGGTTGCAGCTGGCGATTTACTGTTTTGGGGCGTGCTACGCAACATCGAAGATTATCGCCACGAACGGATTAACC
ATGTGTCGATTGCCCTTGACAACGAGTGGATGATTCATGCAAATCAACGCAATTGGAGCATCTCGCTTGATCGCATTGAT
GAAGTGAATGCGCAGGTCTATCAAGCACAAGGGAACCCAGGGTTGGTGGTAATTCGGCGGATTCGCGAGGAGCAGTAG

Upstream 100 bases:

>100_bases
CAAGCGCGTTATCCACAAGTTCAGGTAGCCGTTTTAGCCAATAGTTCACAAGCCCACTTTTTCACCGCTCAAGGTTTCAT
GCTAGCAGAGGACGTGAACG

Downstream 100 bases:

>100_bases
CCATGGAATGGGCGATTTATCCGGTTGAACTACGCTTGCGCAACACGTTTCGGATTGCCCACGGAGCTAGCAATACCCGC
CATAATGTGTTGTTGAATTT

Product: NLP/P60 protein

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MHPLQTTIDQYAAQFDRRRMTILAAHVEEDNGTVLRGRVLDRSQHAALLALLPNVRDELIVLREQPEHGFATVTFGVLDV
RWQATRDSELVTEASFGEGLEVLAHEHEWLQVITSDGYLGWVRRNGVVLHEQPSTYRSAATHVVTSRWLPLWGLEGDQIG
LLPWGIRLEIDEFRDGKAFMRSPAGLPGWLEADSLTPVEDLCSVDSAGIEDMLQAIRQLIGVPYLWGGTTSFGFDCSGLA
QAAYRWLGVQLPRDADQQSQIGRLISREQVAAGDLLFWGVLRNIEDYRHERINHVSIALDNEWMIHANQRNWSISLDRID
EVNAQVYQAQGNPGLVVIRRIREEQ

Sequences:

>Translated_345_residues
MHPLQTTIDQYAAQFDRRRMTILAAHVEEDNGTVLRGRVLDRSQHAALLALLPNVRDELIVLREQPEHGFATVTFGVLDV
RWQATRDSELVTEASFGEGLEVLAHEHEWLQVITSDGYLGWVRRNGVVLHEQPSTYRSAATHVVTSRWLPLWGLEGDQIG
LLPWGIRLEIDEFRDGKAFMRSPAGLPGWLEADSLTPVEDLCSVDSAGIEDMLQAIRQLIGVPYLWGGTTSFGFDCSGLA
QAAYRWLGVQLPRDADQQSQIGRLISREQVAAGDLLFWGVLRNIEDYRHERINHVSIALDNEWMIHANQRNWSISLDRID
EVNAQVYQAQGNPGLVVIRRIREEQ
>Mature_345_residues
MHPLQTTIDQYAAQFDRRRMTILAAHVEEDNGTVLRGRVLDRSQHAALLALLPNVRDELIVLREQPEHGFATVTFGVLDV
RWQATRDSELVTEASFGEGLEVLAHEHEWLQVITSDGYLGWVRRNGVVLHEQPSTYRSAATHVVTSRWLPLWGLEGDQIG
LLPWGIRLEIDEFRDGKAFMRSPAGLPGWLEADSLTPVEDLCSVDSAGIEDMLQAIRQLIGVPYLWGGTTSFGFDCSGLA
QAAYRWLGVQLPRDADQQSQIGRLISREQVAAGDLLFWGVLRNIEDYRHERINHVSIALDNEWMIHANQRNWSISLDRID
EVNAQVYQAQGNPGLVVIRRIREEQ

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 39043; Mature: 39043

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPLQTTIDQYAAQFDRRRMTILAAHVEEDNGTVLRGRVLDRSQHAALLALLPNVRDELI
CCCHHHHHHHHHHHHHHCEEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEE
VLREQPEHGFATVTFGVLDVRWQATRDSELVTEASFGEGLEVLAHEHEWLQVITSDGYLG
EEEECCCCCEEEEEEEEEEEEEECCCCCHHEECCCCCCCHHHHHCCCCEEEEEECCCEEE
WVRRNGVVLHEQPSTYRSAATHVVTSRWLPLWGLEGDQIGLLPWGIRLEIDEFRDGKAFM
EEECCCEEEECCCCHHHHHHHHHHHHCCCEEECCCCCEEEEEECEEEEEECCCCCCHHHH
RSPAGLPGWLEADSLTPVEDLCSVDSAGIEDMLQAIRQLIGVPYLWGGTTSFGFDCSGLA
CCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHH
QAAYRWLGVQLPRDADQQSQIGRLISREQVAAGDLLFWGVLRNIEDYRHERINHVSIALD
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEEEC
NEWMIHANQRNWSISLDRIDEVNAQVYQAQGNPGLVVIRRIREEQ
CCEEEEECCCCEEEEHHHHHCCCCEEEEECCCCCEEEEEECCCCC
>Mature Secondary Structure
MHPLQTTIDQYAAQFDRRRMTILAAHVEEDNGTVLRGRVLDRSQHAALLALLPNVRDELI
CCCHHHHHHHHHHHHHHCEEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEE
VLREQPEHGFATVTFGVLDVRWQATRDSELVTEASFGEGLEVLAHEHEWLQVITSDGYLG
EEEECCCCCEEEEEEEEEEEEEECCCCCHHEECCCCCCCHHHHHCCCCEEEEEECCCEEE
WVRRNGVVLHEQPSTYRSAATHVVTSRWLPLWGLEGDQIGLLPWGIRLEIDEFRDGKAFM
EEECCCEEEECCCCHHHHHHHHHHHHCCCEEECCCCCEEEEEECEEEEEECCCCCCHHHH
RSPAGLPGWLEADSLTPVEDLCSVDSAGIEDMLQAIRQLIGVPYLWGGTTSFGFDCSGLA
CCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHH
QAAYRWLGVQLPRDADQQSQIGRLISREQVAAGDLLFWGVLRNIEDYRHERINHVSIALD
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEEEC
NEWMIHANQRNWSISLDRIDEVNAQVYQAQGNPGLVVIRRIREEQ
CCEEEEECCCCEEEEHHHHHCCCCEEEEECCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]