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The map label for this gene is 159900086

Identifier: 159900086

GI number: 159900086

Start: 4487172

End: 4488464

Strand: Reverse

Name: 159900086

Synonym: Haur_3569

Alternate gene names: NA

Gene position: 4488464-4487172 (Counterclockwise)

Preceding gene: 159900087

Following gene: 159900085

Centisome position: 70.72

GC content: 53.36

Gene sequence:

>1293_bases
ATGCCATTCCAACGCCCAAAACGCCGTAGCCCACAGCGCGGCCCGCAATCAAATGCCGCTCGTCCAGCACGGCCTGGCCG
ACCTGGCTCACGCCCCAATCAAGCGCCAACCCGTGGTCCACGTCATGATCCTGCTGGCCGCCCAGCGGGGGCGGCTCCTG
CCGGAGCAGTTCGTCAGCGAGCATTTGTCAAACAGCCAACGGTTGATATGAGCCGTCCGTTGTTTGCAGTGCAAACCCAA
CCTGGGGTTGGCCAATTGTTGTTGGCCGAAATTAATGCTACCTTGCAAAAACCAATGCTAGTTGCCCAACGCCACGTTAC
CCAAAAAGATGATATGTTGTTGTTTCATACCGACACCAACTCTAAAGAATTGTTTAATTTGCGGACTGCCGAAGATTTAT
TTGTGGTGGCAGCGCGGGCTTTCAACATCTCACCTGATCAAAGTGGTTTGAAGCAAATTCATGCTGCGGTCAAAAATAGT
ATGCTTGTGCCAACAGCCTTGCGGGTTTTTACCTTGAATGGTGGTCGCACGCCCAAAATGACCAGTTTTCGGGTGGTAAC
GCGGGTCACGGGCAAGCAAGATTTTGCTCGTAAAGCCGTGGGTATCGCCGTCGCCGATGCTGTGCGCGATAACTGGCCAG
GCCGCTGGAAATTGGTCGAAGAAGAAGCCGATGTTGAAATGTGGGTAACCCTATTTGGCAGCGAAATTGTGGTTGCAATT
CGGCTTTCAACTGGCGGTATGCGCCATCGCATTCAGCGGGTGGTTGATCGTCCGGCGGCCTTGCGACCTGCGATTGCCGC
AGCAATGGTGCGGCTCTCCAACCCGCAACCGACCGATGTCTTTTTAGATGCCATGGCTGGCACAGGAACGATCATTGCTG
AACGCGCAGCAGTTGGCCCGTTTGAGCGGCTGATTGCTGGCGATAAGAGCCGTGAAGCAGTCAAAGCTCTGAGCCGTAAC
TTGGCAAGCGTTGGCGGCGATTTAGCCATTCGCCGTCTAGATGCTACTGACTTACCATTCCAACCAGGCGAAATTAACAA
GCTCGTCACCAATTTGCCCTTTGGTAAACAAGTCAACAATATCGATGAATTGCATCAACTCTATTCTGGGGTCTGTGCAG
AATGGGCGCGAATCGTTGCGCCTGGCGGCATGATCGTGGCGCTGGCTGCCGAAATCGATGTGCTGCGCGAAAAAATCAAT
GCTACCCCAGAATTACGAGTTCGTGGAACCTTCCCAATCGCTGTATTGGGTCAAACGGCCACGATTGTGCAACTTGAACG
TCGTAGAATGTAG

Upstream 100 bases:

>100_bases
GCGCGGGCTATGGTGGGTTTGTTGGTCAACAGCATGGCTGTTTGGCCTGAATTTAGTCTGATGAAAGGAAAACTCGTAAT
TTTTGCGAGTTGTAATAGAT

Downstream 100 bases:

>100_bases
TGATGTTGGCTTTTGGGCCGCATTGCGAAAGAGGTATAACCATGGAAAAACCAATTGTGGCGATTGTTGGCCGACCTAAC
GTTGGCAAATCGACCTTGTT

Product: putative RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MPFQRPKRRSPQRGPQSNAARPARPGRPGSRPNQAPTRGPRHDPAGRPAGAAPAGAVRQRAFVKQPTVDMSRPLFAVQTQ
PGVGQLLLAEINATLQKPMLVAQRHVTQKDDMLLFHTDTNSKELFNLRTAEDLFVVAARAFNISPDQSGLKQIHAAVKNS
MLVPTALRVFTLNGGRTPKMTSFRVVTRVTGKQDFARKAVGIAVADAVRDNWPGRWKLVEEEADVEMWVTLFGSEIVVAI
RLSTGGMRHRIQRVVDRPAALRPAIAAAMVRLSNPQPTDVFLDAMAGTGTIIAERAAVGPFERLIAGDKSREAVKALSRN
LASVGGDLAIRRLDATDLPFQPGEINKLVTNLPFGKQVNNIDELHQLYSGVCAEWARIVAPGGMIVALAAEIDVLREKIN
ATPELRVRGTFPIAVLGQTATIVQLERRRM

Sequences:

>Translated_430_residues
MPFQRPKRRSPQRGPQSNAARPARPGRPGSRPNQAPTRGPRHDPAGRPAGAAPAGAVRQRAFVKQPTVDMSRPLFAVQTQ
PGVGQLLLAEINATLQKPMLVAQRHVTQKDDMLLFHTDTNSKELFNLRTAEDLFVVAARAFNISPDQSGLKQIHAAVKNS
MLVPTALRVFTLNGGRTPKMTSFRVVTRVTGKQDFARKAVGIAVADAVRDNWPGRWKLVEEEADVEMWVTLFGSEIVVAI
RLSTGGMRHRIQRVVDRPAALRPAIAAAMVRLSNPQPTDVFLDAMAGTGTIIAERAAVGPFERLIAGDKSREAVKALSRN
LASVGGDLAIRRLDATDLPFQPGEINKLVTNLPFGKQVNNIDELHQLYSGVCAEWARIVAPGGMIVALAAEIDVLREKIN
ATPELRVRGTFPIAVLGQTATIVQLERRRM
>Mature_429_residues
PFQRPKRRSPQRGPQSNAARPARPGRPGSRPNQAPTRGPRHDPAGRPAGAAPAGAVRQRAFVKQPTVDMSRPLFAVQTQP
GVGQLLLAEINATLQKPMLVAQRHVTQKDDMLLFHTDTNSKELFNLRTAEDLFVVAARAFNISPDQSGLKQIHAAVKNSM
LVPTALRVFTLNGGRTPKMTSFRVVTRVTGKQDFARKAVGIAVADAVRDNWPGRWKLVEEEADVEMWVTLFGSEIVVAIR
LSTGGMRHRIQRVVDRPAALRPAIAAAMVRLSNPQPTDVFLDAMAGTGTIIAERAAVGPFERLIAGDKSREAVKALSRNL
ASVGGDLAIRRLDATDLPFQPGEINKLVTNLPFGKQVNNIDELHQLYSGVCAEWARIVAPGGMIVALAAEIDVLREKINA
TPELRVRGTFPIAVLGQTATIVQLERRRM

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Homo sapiens, GI166197708, Length=218, Percent_Identity=29.8165137614679, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI166197706, Length=218, Percent_Identity=29.8165137614679, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32566195, Length=250, Percent_Identity=26.4, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 46885; Mature: 46754

Theoretical pI: Translated: 11.62; Mature: 11.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFQRPKRRSPQRGPQSNAARPARPGRPGSRPNQAPTRGPRHDPAGRPAGAAPAGAVRQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
AFVKQPTVDMSRPLFAVQTQPGVGQLLLAEINATLQKPMLVAQRHVTQKDDMLLFHTDTN
HHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
SKELFNLRTAEDLFVVAARAFNISPDQSGLKQIHAAVKNSMLVPTALRVFTLNGGRTPKM
CCHHEECCCHHHHHEEHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
TSFRVVTRVTGKQDFARKAVGIAVADAVRDNWPGRWKLVEEEADVEMWVTLFGSEIVVAI
CCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCEEEEEE
RLSTGGMRHRIQRVVDRPAALRPAIAAAMVRLSNPQPTDVFLDAMAGTGTIIAERAAVGP
EECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEHHHCCCH
FERLIAGDKSREAVKALSRNLASVGGDLAIRRLDATDLPFQPGEINKLVTNLPFGKQVNN
HHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCC
IDELHQLYSGVCAEWARIVAPGGMIVALAAEIDVLREKINATPELRVRGTFPIAVLGQTA
HHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCH
TIVQLERRRM
HEEHHHHHCC
>Mature Secondary Structure 
PFQRPKRRSPQRGPQSNAARPARPGRPGSRPNQAPTRGPRHDPAGRPAGAAPAGAVRQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
AFVKQPTVDMSRPLFAVQTQPGVGQLLLAEINATLQKPMLVAQRHVTQKDDMLLFHTDTN
HHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
SKELFNLRTAEDLFVVAARAFNISPDQSGLKQIHAAVKNSMLVPTALRVFTLNGGRTPKM
CCHHEECCCHHHHHEEHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
TSFRVVTRVTGKQDFARKAVGIAVADAVRDNWPGRWKLVEEEADVEMWVTLFGSEIVVAI
CCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCEEEEEE
RLSTGGMRHRIQRVVDRPAALRPAIAAAMVRLSNPQPTDVFLDAMAGTGTIIAERAAVGP
EECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEHHHCCCH
FERLIAGDKSREAVKALSRNLASVGGDLAIRRLDATDLPFQPGEINKLVTNLPFGKQVNN
HHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCC
IDELHQLYSGVCAEWARIVAPGGMIVALAAEIDVLREKINATPELRVRGTFPIAVLGQTA
HHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCH
TIVQLERRRM
HEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]