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The map label for this gene is aidB [H]

Identifier: 159899922

GI number: 159899922

Start: 4288034

End: 4289704

Strand: Reverse

Name: aidB [H]

Synonym: Haur_3405

Alternate gene names: 159899922

Gene position: 4289704-4288034 (Counterclockwise)

Preceding gene: 159899923

Following gene: 159899921

Centisome position: 67.59

GC content: 52.12

Gene sequence:

>1671_bases
ATGCCGCCCTTTAATCAACCAGCCCCACAACTTGGCAATCAATATAGCGATGATCGTCTACTCCAGCTTTATCTCCGCCG
CCGCCTACCCGCCGATGTCCTTAGCCAAATCAAACCTGCGCTGCAAACAATCGGCGATTTAGCTGGCAACGAATTGTATC
AGTTGCAATTGGCTGATCGTTTGAATGAGCCGCAATTAACCCAATGGGATGCCTGGGGCGAGCGGATTGATCAGATTGTA
TTGACCCCGCTCTGGCAACGTGCCGAGCAAATCGCTGCCAGTTATGGCTTGATTGCCACGGCCTACGAGCAAACCTTCCA
TGAATATTCGCGTACCTGCCAATTTGCTTTAGCCTATCTCTTCCATCCATCGAGCGATGTGTATAGCTGCCCCTTGGCGA
TGACTGACGGCGCTGCCCGAACCTTGCTCCAAGCGGGCAATCAGGCCTTGATCGAACGAGCCATACCGCATTTAATTAGC
CGCGATCCCGACCAATTTTGGACGAGCGGCCAGTGGATGACCGAATCGACTGGCGGTTCAGATGTTGGGCTTTCGGAAAC
GATCGCCCGCCAAGCCGAGGATGGTACTTGGCGTTTGTATGGCCGCAAGTGGTTTAGCTCGGCTACAACCTCGCAAATGG
CCTTGACTTTGGCGCGACCAGAGGGCAATCCCGCTGGTGGGCGTGGTTTGGCTTTGTTCTACGTCGAAACCCGCGATCAA
CGCGGGCGGCTCACTCAGATCGAAGTTAATCGGCTCAAGGATAAATTGGGTACGCGCAAAGTACCGACGGCTGAGCTGAA
TCTGCTTGGCACACCAGCAATTCCGGTGCAAGGCTTGCGCGATGGTGTGCGTGCGATTGTGCCGATGTTGCAAATTACCC
GCACTTGGAACAGCGTTTCAGCAGTGGGCTTTATGCGACGTGGCATGGCGCTCGCCCAAGATTATGCCCAAAAACGCTGG
GCTTTTGGCTCATTGCTCAATCAAAAACCACTGCATGTCGATACCTTGGCTGGTTTGCAGGCTGAGTATGCTGGGGCGTT
CCTGCTGACCTTTTATTTAATCGAATTATTGGGCTTAGATGAAACTGGCCGAAGCACGCCCCAACAACGACAATTATTAA
GATTATTAACATCTATTGCCAAATTGACCACCGCTCGCCAAGCAGTAAACCATACCAGCGAGATTATTGAGAGTTTTGGT
GGGGCGGGCTATGTTGAGGATACAGGCTTGCCCAGCTTGCTGCGTGATGCGCAAGTGCTTTCGATTTGGGAAGGCACGAC
CAATGTTTTAGCGCTTGACAGCCTACGAGCACTTAGCGAAGATCCTGGCATTTGGCCCGTATTGCGTGAACAAGTCAATT
TGTGGCTGAGCAATGCTCATGATCCAAGCCTCAGCCAAGCGATTGTGGTGGTCCAAACTGCGCTTGATCGATGTGAACAA
TGGCTCGCTGAAAGTAGCAATGATCGTAGTGTTGCTGAAATGGGGGCACGGCGTTGGGCATTAACCCTTGGGCGAGCATT
GGAATTGGCGTTGTTAATCGAACATGCCCAAGCCGCCTTGATTGCCCCGAATGATCGTTGGTTGGCGGCAGCAGCCCGCC
GGTTTAGTTGTAGCGCAGTTAATTTAATTGCCACAATCGATGCCAATGATAACCAAATATTGCTTAGTTGA

Upstream 100 bases:

>100_bases
CTAACTGCTGATCCATGATCCCTAGCCCCTGCGTGAAGGCTACTTTGAGCGCTATAATACAGTCATTCGTTGGTTTTATT
AATCTTTGGGAGTTGCAACG

Downstream 100 bases:

>100_bases
GGGTGCTGGCTGTAAGAATAATACCTAACATTCTATAACAACCGTATTTCAATAAATGGCGCTAGTACTATAAAAAAGCA
GGCTAGCCCTAGTACCGTTG

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 555

Protein sequence:

>556_residues
MPPFNQPAPQLGNQYSDDRLLQLYLRRRLPADVLSQIKPALQTIGDLAGNELYQLQLADRLNEPQLTQWDAWGERIDQIV
LTPLWQRAEQIAASYGLIATAYEQTFHEYSRTCQFALAYLFHPSSDVYSCPLAMTDGAARTLLQAGNQALIERAIPHLIS
RDPDQFWTSGQWMTESTGGSDVGLSETIARQAEDGTWRLYGRKWFSSATTSQMALTLARPEGNPAGGRGLALFYVETRDQ
RGRLTQIEVNRLKDKLGTRKVPTAELNLLGTPAIPVQGLRDGVRAIVPMLQITRTWNSVSAVGFMRRGMALAQDYAQKRW
AFGSLLNQKPLHVDTLAGLQAEYAGAFLLTFYLIELLGLDETGRSTPQQRQLLRLLTSIAKLTTARQAVNHTSEIIESFG
GAGYVEDTGLPSLLRDAQVLSIWEGTTNVLALDSLRALSEDPGIWPVLREQVNLWLSNAHDPSLSQAIVVVQTALDRCEQ
WLAESSNDRSVAEMGARRWALTLGRALELALLIEHAQAALIAPNDRWLAAAARRFSCSAVNLIATIDANDNQILLS

Sequences:

>Translated_556_residues
MPPFNQPAPQLGNQYSDDRLLQLYLRRRLPADVLSQIKPALQTIGDLAGNELYQLQLADRLNEPQLTQWDAWGERIDQIV
LTPLWQRAEQIAASYGLIATAYEQTFHEYSRTCQFALAYLFHPSSDVYSCPLAMTDGAARTLLQAGNQALIERAIPHLIS
RDPDQFWTSGQWMTESTGGSDVGLSETIARQAEDGTWRLYGRKWFSSATTSQMALTLARPEGNPAGGRGLALFYVETRDQ
RGRLTQIEVNRLKDKLGTRKVPTAELNLLGTPAIPVQGLRDGVRAIVPMLQITRTWNSVSAVGFMRRGMALAQDYAQKRW
AFGSLLNQKPLHVDTLAGLQAEYAGAFLLTFYLIELLGLDETGRSTPQQRQLLRLLTSIAKLTTARQAVNHTSEIIESFG
GAGYVEDTGLPSLLRDAQVLSIWEGTTNVLALDSLRALSEDPGIWPVLREQVNLWLSNAHDPSLSQAIVVVQTALDRCEQ
WLAESSNDRSVAEMGARRWALTLGRALELALLIEHAQAALIAPNDRWLAAAARRFSCSAVNLIATIDANDNQILLS
>Mature_555_residues
PPFNQPAPQLGNQYSDDRLLQLYLRRRLPADVLSQIKPALQTIGDLAGNELYQLQLADRLNEPQLTQWDAWGERIDQIVL
TPLWQRAEQIAASYGLIATAYEQTFHEYSRTCQFALAYLFHPSSDVYSCPLAMTDGAARTLLQAGNQALIERAIPHLISR
DPDQFWTSGQWMTESTGGSDVGLSETIARQAEDGTWRLYGRKWFSSATTSQMALTLARPEGNPAGGRGLALFYVETRDQR
GRLTQIEVNRLKDKLGTRKVPTAELNLLGTPAIPVQGLRDGVRAIVPMLQITRTWNSVSAVGFMRRGMALAQDYAQKRWA
FGSLLNQKPLHVDTLAGLQAEYAGAFLLTFYLIELLGLDETGRSTPQQRQLLRLLTSIAKLTTARQAVNHTSEIIESFGG
AGYVEDTGLPSLLRDAQVLSIWEGTTNVLALDSLRALSEDPGIWPVLREQVNLWLSNAHDPSLSQAIVVVQTALDRCEQW
LAESSNDRSVAEMGARRWALTLGRALELALLIEHAQAALIAPNDRWLAAAARRFSCSAVNLIATIDANDNQILLS

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=317, Percent_Identity=25.5520504731861, Blast_Score=69, Evalue=2e-11,
Organism=Escherichia coli, GI87082384, Length=463, Percent_Identity=31.9654427645788, Blast_Score=178, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI86563383, Length=549, Percent_Identity=42.8051001821494, Blast_Score=404, Evalue=1e-113,
Organism=Caenorhabditis elegans, GI86563381, Length=549, Percent_Identity=42.8051001821494, Blast_Score=404, Evalue=1e-112,
Organism=Drosophila melanogaster, GI21356377, Length=350, Percent_Identity=26.2857142857143, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 61585; Mature: 61454

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPFNQPAPQLGNQYSDDRLLQLYLRRRLPADVLSQIKPALQTIGDLAGNELYQLQLADR
CCCCCCCCHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHH
LNEPQLTQWDAWGERIDQIVLTPLWQRAEQIAASYGLIATAYEQTFHEYSRTCQFALAYL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FHPSSDVYSCPLAMTDGAARTLLQAGNQALIERAIPHLISRDPDQFWTSGQWMTESTGGS
CCCCCCCEECCCEECCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCEEECCCCCC
DVGLSETIARQAEDGTWRLYGRKWFSSATTSQMALTLARPEGNPAGGRGLALFYVETRDQ
CCCHHHHHHHHCCCCCEEEECHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCC
RGRLTQIEVNRLKDKLGTRKVPTAELNLLGTPAIPVQGLRDGVRAIVPMLQITRTWNSVS
CCCEEHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AVGFMRRGMALAQDYAQKRWAFGSLLNQKPLHVDTLAGLQAEYAGAFLLTFYLIELLGLD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCC
ETGRSTPQQRQLLRLLTSIAKLTTARQAVNHTSEIIESFGGAGYVEDTGLPSLLRDAQVL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHE
SIWEGTTNVLALDSLRALSEDPGIWPVLREQVNLWLSNAHDPSLSQAIVVVQTALDRCEQ
EEECCCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
WLAESSNDRSVAEMGARRWALTLGRALELALLIEHAQAALIAPNDRWLAAAARRFSCSAV
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCEE
NLIATIDANDNQILLS
EEEEEEECCCCEEEEC
>Mature Secondary Structure 
PPFNQPAPQLGNQYSDDRLLQLYLRRRLPADVLSQIKPALQTIGDLAGNELYQLQLADR
CCCCCCCHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHH
LNEPQLTQWDAWGERIDQIVLTPLWQRAEQIAASYGLIATAYEQTFHEYSRTCQFALAYL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FHPSSDVYSCPLAMTDGAARTLLQAGNQALIERAIPHLISRDPDQFWTSGQWMTESTGGS
CCCCCCCEECCCEECCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCEEECCCCCC
DVGLSETIARQAEDGTWRLYGRKWFSSATTSQMALTLARPEGNPAGGRGLALFYVETRDQ
CCCHHHHHHHHCCCCCEEEECHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCC
RGRLTQIEVNRLKDKLGTRKVPTAELNLLGTPAIPVQGLRDGVRAIVPMLQITRTWNSVS
CCCEEHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AVGFMRRGMALAQDYAQKRWAFGSLLNQKPLHVDTLAGLQAEYAGAFLLTFYLIELLGLD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCC
ETGRSTPQQRQLLRLLTSIAKLTTARQAVNHTSEIIESFGGAGYVEDTGLPSLLRDAQVL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHE
SIWEGTTNVLALDSLRALSEDPGIWPVLREQVNLWLSNAHDPSLSQAIVVVQTALDRCEQ
EEECCCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
WLAESSNDRSVAEMGARRWALTLGRALELALLIEHAQAALIAPNDRWLAAAARRFSCSAV
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCCCCEE
NLIATIDANDNQILLS
EEEEEEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]