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The map label for this gene is deoC [H]

Identifier: 159899789

GI number: 159899789

Start: 4134051

End: 4135037

Strand: Reverse

Name: deoC [H]

Synonym: Haur_3271

Alternate gene names: 159899789

Gene position: 4135037-4134051 (Counterclockwise)

Preceding gene: 159899791

Following gene: 159899788

Centisome position: 65.15

GC content: 51.37

Gene sequence:

>987_bases
ATGCAAACCGAAGTGGAGCGTGTCACGGCAATGACGCACGAACAACGTAACCCCATCAGCCCGCTCGACCTTGGCTGGGT
CAATAGTATTCGCGTCAATCGCTCAGCGGTGGAGCGCCGCGTGAGCAGCTTGCCAAATCGACGCACGGTTAAAAAAGATT
GGCAGGCAGCTTGGCTGTTAAAAGCAATTAGCTGTATGGATTTAACCACCCTTTCAGGTGATGATACGGTTGGCACAGTC
CAGCGTTTATGTTTAAAAGCTCGTCAGCCGATTCGTGGCGATTTGGTCGATGCACTGGGTATTCGCAGTCTCAATCTAAC
GGTTGGTGCTGTGTGTGTCTACCATACCTTTGTTGCCACCGCCGTACAATCACTCCAAGGTACAGCCATTCCGGTTGCCG
CAGTATCAACTGGCTTCCCCGCAGGGTTATCCCCCATGGAGTTACGCTTGCGTGAGATCGAAGCATCGGTTGCTGCTGGT
GCTCGCGAAATCGATATTGTGATTTCACGGCATCTTGTGCTGAACGGCGATTGGCAAGGCTTGTATGATGAAGTGAGGGC
GTTTCGCGAAGCCTGCGGCGAAGCCCATATGAAAACCATTTTAGCCACAGGCGAGCTTGGAACCTTGCGCAATATTGCTC
AAGCTAGCCTAGTTTGTATGTTGGCTGGCGCTGATTTCATCAAAACTTCGACTGGCAAAGAGCCAGTTAATGCCACCCTG
CCAGTGTCGTTAGTCATGGTTCGGGCAATTCGCGATTACCATGAGCAAACCGGCTATAAAGTTGGCTTCAAGCCTGCTGG
TGGCATCCGAACTGCTAAACAATCGTTGGATTGGCTGGCGTTGATCAAGGAAGAACTCGGCGATCAATGGCTGCATCCAC
ATTTGTTTCGCTATGGTGCGAGTGCCTTGCTGGGCGATATTGAGCGTCAATTAGAGCATTATTTAACTGGCCAATATTCG
TCGGCGATTCGCCATCCAATGGGGTAG

Upstream 100 bases:

>100_bases
AAAAGCTTATGGTATTATCAGCGACATGATCCGCATTGTGGATGACGATTTGATAACAACCAGTATGGGTCGATATGCCT
TTCGACCCCAAGGATGAACT

Downstream 100 bases:

>100_bases
TACAATGAAACGTCTGGTTCGTGGGTTGCTGGCGAGTTTTATGGTGTTGGTGGGAGTTTTACACTTTACCAATCCCAAGC
CCTTCATCAAGATTGTACCA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MQTEVERVTAMTHEQRNPISPLDLGWVNSIRVNRSAVERRVSSLPNRRTVKKDWQAAWLLKAISCMDLTTLSGDDTVGTV
QRLCLKARQPIRGDLVDALGIRSLNLTVGAVCVYHTFVATAVQSLQGTAIPVAAVSTGFPAGLSPMELRLREIEASVAAG
AREIDIVISRHLVLNGDWQGLYDEVRAFREACGEAHMKTILATGELGTLRNIAQASLVCMLAGADFIKTSTGKEPVNATL
PVSLVMVRAIRDYHEQTGYKVGFKPAGGIRTAKQSLDWLALIKEELGDQWLHPHLFRYGASALLGDIERQLEHYLTGQYS
SAIRHPMG

Sequences:

>Translated_328_residues
MQTEVERVTAMTHEQRNPISPLDLGWVNSIRVNRSAVERRVSSLPNRRTVKKDWQAAWLLKAISCMDLTTLSGDDTVGTV
QRLCLKARQPIRGDLVDALGIRSLNLTVGAVCVYHTFVATAVQSLQGTAIPVAAVSTGFPAGLSPMELRLREIEASVAAG
AREIDIVISRHLVLNGDWQGLYDEVRAFREACGEAHMKTILATGELGTLRNIAQASLVCMLAGADFIKTSTGKEPVNATL
PVSLVMVRAIRDYHEQTGYKVGFKPAGGIRTAKQSLDWLALIKEELGDQWLHPHLFRYGASALLGDIERQLEHYLTGQYS
SAIRHPMG
>Mature_328_residues
MQTEVERVTAMTHEQRNPISPLDLGWVNSIRVNRSAVERRVSSLPNRRTVKKDWQAAWLLKAISCMDLTTLSGDDTVGTV
QRLCLKARQPIRGDLVDALGIRSLNLTVGAVCVYHTFVATAVQSLQGTAIPVAAVSTGFPAGLSPMELRLREIEASVAAG
AREIDIVISRHLVLNGDWQGLYDEVRAFREACGEAHMKTILATGELGTLRNIAQASLVCMLAGADFIKTSTGKEPVNATL
PVSLVMVRAIRDYHEQTGYKVGFKPAGGIRTAKQSLDWLALIKEELGDQWLHPHLFRYGASALLGDIERQLEHYLTGQYS
SAIRHPMG

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=313, Percent_Identity=60.702875399361, Blast_Score=397, Evalue=1e-110,
Organism=Escherichia coli, GI1790841, Length=245, Percent_Identity=39.5918367346939, Blast_Score=140, Evalue=9e-35,
Organism=Caenorhabditis elegans, GI17533015, Length=279, Percent_Identity=47.3118279569892, Blast_Score=243, Evalue=1e-64,
Organism=Drosophila melanogaster, GI19922098, Length=300, Percent_Identity=47.3333333333333, Blast_Score=270, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 35964; Mature: 35964

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTEVERVTAMTHEQRNPISPLDLGWVNSIRVNRSAVERRVSSLPNRRTVKKDWQAAWLL
CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
KAISCMDLTTLSGDDTVGTVQRLCLKARQPIRGDLVDALGIRSLNLTVGAVCVYHTFVAT
HHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCEECHHHHHHHHHHHHHHH
AVQSLQGTAIPVAAVSTGFPAGLSPMELRLREIEASVAAGAREIDIVISRHLVLNGDWQG
HHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHEEEEEECEEEECCCCHH
LYDEVRAFREACGEAHMKTILATGELGTLRNIAQASLVCMLAGADFIKTSTGKEPVNATL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
PVSLVMVRAIRDYHEQTGYKVGFKPAGGIRTAKQSLDWLALIKEELGDQWLHPHLFRYGA
HHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHH
SALLGDIERQLEHYLTGQYSSAIRHPMG
HHHHHHHHHHHHHHHCCCHHHHHCCCCC
>Mature Secondary Structure
MQTEVERVTAMTHEQRNPISPLDLGWVNSIRVNRSAVERRVSSLPNRRTVKKDWQAAWLL
CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
KAISCMDLTTLSGDDTVGTVQRLCLKARQPIRGDLVDALGIRSLNLTVGAVCVYHTFVAT
HHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCEECHHHHHHHHHHHHHHH
AVQSLQGTAIPVAAVSTGFPAGLSPMELRLREIEASVAAGAREIDIVISRHLVLNGDWQG
HHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHEEEEEECEEEECCCCHH
LYDEVRAFREACGEAHMKTILATGELGTLRNIAQASLVCMLAGADFIKTSTGKEPVNATL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
PVSLVMVRAIRDYHEQTGYKVGFKPAGGIRTAKQSLDWLALIKEELGDQWLHPHLFRYGA
HHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHH
SALLGDIERQLEHYLTGQYSSAIRHPMG
HHHHHHHHHHHHHHHCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA