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The map label for this gene is ycfQ [H]

Identifier: 159899655

GI number: 159899655

Start: 3964930

End: 3965565

Strand: Reverse

Name: ycfQ [H]

Synonym: Haur_3137

Alternate gene names: 159899655

Gene position: 3965565-3964930 (Counterclockwise)

Preceding gene: 159899657

Following gene: 159899654

Centisome position: 62.48

GC content: 52.04

Gene sequence:

>636_bases
ATGTCTGCGCAAGAACTTCCATTAGCCAATAACCAACGACGTGGCCGACCACGCGAATTTGACCGAACCAATGCCTTGGA
GTGTGCGATGCGCCAATTTTGGCAGCATGGCTACGAAACGCTCTCGATGGCTGATCTGACAACCTGTTTGGGAATTAATC
CGCCTAGTTTGTATGCGGCCTTTGGTAGCAAGCAAGCCTTTTTTCTCGAAGCGATCGACCATTATCTGGCGACGCGTGGA
GCCTACGTTTACGCCGTGCCTAGCGACCAAAGCTCGCCGCGAGCGATGTTGGCCCAACTGCTGCAACGAGCTGCTGAGGC
CTTCAGCGATGCGGCTTATCCAGCGGGCTGTTTTGTGCTTTCTAGCATTGCCACAACTTACGATTCGCATGAAATTGAGC
AAGCAATTGTGGATCGCTGCCAGCAACGTATGAGCAAAATCAACGAATTGGTAGAGTTGGGCGTGCAAACAGGCGAGCTG
CCAGCTACGACTAACGCTGATGAATTAGCTCAATTTTTCATTTGTGTGCTACAAGGCATGTCGTTGCAAGCACGCTTGGG
AGCCAGCACCAATCAACTCCAAGCGATTGTTGCGAATGCGCTGCAATTGTGGCCGCAAACCATGCGTTTGCGCTAG

Upstream 100 bases:

>100_bases
ATCGGCTTGCTCCTTGCTAATAGATTGGGTATAATGAATTATGTAGTGATTATTACAGAATAGTATAATAGGCCTAAGCA
AAGAAAGCAAGAGGACTGTG

Downstream 100 bases:

>100_bases
GCTAGTTTCTGGTACAATGCCTCTCCGGAGGTTCAACTGTGGAACGCACAACGCTTGCAAGTGCTCTAACCACAACGTCA
TCACCGTTTCCTTGGACGGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSAQELPLANNQRRGRPREFDRTNALECAMRQFWQHGYETLSMADLTTCLGINPPSLYAAFGSKQAFFLEAIDHYLATRG
AYVYAVPSDQSSPRAMLAQLLQRAAEAFSDAAYPAGCFVLSSIATTYDSHEIEQAIVDRCQQRMSKINELVELGVQTGEL
PATTNADELAQFFICVLQGMSLQARLGASTNQLQAIVANALQLWPQTMRLR

Sequences:

>Translated_211_residues
MSAQELPLANNQRRGRPREFDRTNALECAMRQFWQHGYETLSMADLTTCLGINPPSLYAAFGSKQAFFLEAIDHYLATRG
AYVYAVPSDQSSPRAMLAQLLQRAAEAFSDAAYPAGCFVLSSIATTYDSHEIEQAIVDRCQQRMSKINELVELGVQTGEL
PATTNADELAQFFICVLQGMSLQARLGASTNQLQAIVANALQLWPQTMRLR
>Mature_210_residues
SAQELPLANNQRRGRPREFDRTNALECAMRQFWQHGYETLSMADLTTCLGINPPSLYAAFGSKQAFFLEAIDHYLATRGA
YVYAVPSDQSSPRAMLAQLLQRAAEAFSDAAYPAGCFVLSSIATTYDSHEIEQAIVDRCQQRMSKINELVELGVQTGELP
ATTNADELAQFFICVLQGMSLQARLGASTNQLQAIVANALQLWPQTMRLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=201, Percent_Identity=35.3233830845771, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI87082397, Length=196, Percent_Identity=32.1428571428571, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23387; Mature: 23256

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQELPLANNQRRGRPREFDRTNALECAMRQFWQHGYETLSMADLTTCLGINPPSLYAA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FGSKQAFFLEAIDHYLATRGAYVYAVPSDQSSPRAMLAQLLQRAAEAFSDAAYPAGCFVL
HCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
SSIATTYDSHEIEQAIVDRCQQRMSKINELVELGVQTGELPATTNADELAQFFICVLQGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
SLQARLGASTNQLQAIVANALQLWPQTMRLR
CHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAQELPLANNQRRGRPREFDRTNALECAMRQFWQHGYETLSMADLTTCLGINPPSLYAA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FGSKQAFFLEAIDHYLATRGAYVYAVPSDQSSPRAMLAQLLQRAAEAFSDAAYPAGCFVL
HCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
SSIATTYDSHEIEQAIVDRCQQRMSKINELVELGVQTGELPATTNADELAQFFICVLQGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
SLQARLGASTNQLQAIVANALQLWPQTMRLR
CHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]