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The map label for this gene is sigZ [H]

Identifier: 159899340

GI number: 159899340

Start: 3589092

End: 3589643

Strand: Reverse

Name: sigZ [H]

Synonym: Haur_2821

Alternate gene names: 159899340

Gene position: 3589643-3589092 (Counterclockwise)

Preceding gene: 159899341

Following gene: 159899338

Centisome position: 56.56

GC content: 49.46

Gene sequence:

>552_bases
ATGAACCAGCTTGATCTGACTAACCTTTGGCAAAACCTAGCGCAGCCATTGCGGCGATTTTTGCAGGCTCGTTTAGCCGA
TCAAGCAGCAGTCGAAGATTTGTTGCAAGATATTTTTCTAGCGGCCTATCTCAAATCTGCGCAATTGCAGGATTCTGAGC
GCAGCGAGGCTTGGCTTTGGCAAATTGCGCGGCGCAAATTAATCGATCATTATCGTGTGCGGCGTGAAACTAGCCCACTT
GATGAAATGCAGGCAGCCGAAAACAACCAGCAACCACCAATTTTAGCAGGCTTTGATGCTTGTGTGCAGCAAATGTTGGA
TCGCTTACCCAGCCAAGATCGTTGGGTTTTGCAGCGCACGGCCTTCGAGGGCATCAGCCAACAAGCCTTGAGTAGCGAGT
TGGGCTTATCATTTTCGGGCACAAAATCACGGGTTCAGCGGGCGCGTCAAAAGTTGCGGGTATTGTTTGATCAATGTTGT
GTGGTGGAGCGTGATCCTGCGGGCCATGTTTTGGGTTGTCATCCCCATCGCCAATTAATTCAATTCGAATAA

Upstream 100 bases:

>100_bases
CTACGTTGCGTGGAGTTGGGCCGGATGCATCGCGAGTGGTGCGCCATATTCAAGTTCGCATGCAGCAACCAGCAGGTTGT
TGTCGCTGGGCGATGGGGCA

Downstream 100 bases:

>100_bases
CTGCGTCCTTTGGCAAATTGGCCGTCTTTAATAGTAGAAGCGCTTGAATACTGCTTCAACTGAATTTATGTTAAGGAGAA
CGATTATGCCAACGACCGAA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MNQLDLTNLWQNLAQPLRRFLQARLADQAAVEDLLQDIFLAAYLKSAQLQDSERSEAWLWQIARRKLIDHYRVRRETSPL
DEMQAAENNQQPPILAGFDACVQQMLDRLPSQDRWVLQRTAFEGISQQALSSELGLSFSGTKSRVQRARQKLRVLFDQCC
VVERDPAGHVLGCHPHRQLIQFE

Sequences:

>Translated_183_residues
MNQLDLTNLWQNLAQPLRRFLQARLADQAAVEDLLQDIFLAAYLKSAQLQDSERSEAWLWQIARRKLIDHYRVRRETSPL
DEMQAAENNQQPPILAGFDACVQQMLDRLPSQDRWVLQRTAFEGISQQALSSELGLSFSGTKSRVQRARQKLRVLFDQCC
VVERDPAGHVLGCHPHRQLIQFE
>Mature_183_residues
MNQLDLTNLWQNLAQPLRRFLQARLADQAAVEDLLQDIFLAAYLKSAQLQDSERSEAWLWQIARRKLIDHYRVRRETSPL
DEMQAAENNQQPPILAGFDACVQQMLDRLPSQDRWVLQRTAFEGISQQALSSELGLSFSGTKSRVQRARQKLRVLFDQCC
VVERDPAGHVLGCHPHRQLIQFE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014304
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21165; Mature: 21165

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLDLTNLWQNLAQPLRRFLQARLADQAAVEDLLQDIFLAAYLKSAQLQDSERSEAWLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
QIARRKLIDHYRVRRETSPLDEMQAAENNQQPPILAGFDACVQQMLDRLPSQDRWVLQRT
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHH
AFEGISQQALSSELGLSFSGTKSRVQRARQKLRVLFDQCCVVERDPAGHVLGCHPHRQLI
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHH
QFE
CCC
>Mature Secondary Structure
MNQLDLTNLWQNLAQPLRRFLQARLADQAAVEDLLQDIFLAAYLKSAQLQDSERSEAWLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
QIARRKLIDHYRVRRETSPLDEMQAAENNQQPPILAGFDACVQQMLDRLPSQDRWVLQRT
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHH
AFEGISQQALSSELGLSFSGTKSRVQRARQKLRVLFDQCCVVERDPAGHVLGCHPHRQLI
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHH
QFE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]