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The map label for this gene is ydeS [H]

Identifier: 159899074

GI number: 159899074

Start: 3282044

End: 3282661

Strand: Reverse

Name: ydeS [H]

Synonym: Haur_2555

Alternate gene names: 159899074

Gene position: 3282661-3282044 (Counterclockwise)

Preceding gene: 159899079

Following gene: 159899068

Centisome position: 51.72

GC content: 52.1

Gene sequence:

>618_bases
ATGAAATCTGAGCCATCCGAGGGATCTGATGAGCCGAATGTGTATCAATCGTTGTTGCATCGCCAACGTCCAGGCGGGCG
CAGTGCTAAGGTGCATGCGGCGGTGTTGCAAGCCACTGGCGAATTATTGTTCGAGCAAGGCTATGCCCAGTTGCGGATTG
CTGATGTAGCTCAACGCGCAGGGGTGCATGAAACCTCAATTTATCGGCGCTGGAAAACTAAGGCCATGCTGGTGGCGGAT
ACCGTGCTAGCCTTGTTTGATCAGCATGTGCCAAACCCCGATACTGGCTCGTTTCGCGAGGATGTATTGAGCTTTTTGCC
CAGTTTGGTGCGCTATTTACAATCGCCAGAGGGTGAAGCGCTTGGTCGGGCTTGTGTTGATGTTTCAAATTTGGCCGAGG
CGGCTGAGGCGCGTCAAGCAGTCTGGGGCATTTGGGTCGATCAATTTGGAGTATTGGTTGAGCGAGCGATCGCTCGCGGT
GAGTTGCCAGCAACAATCAATGCCCAAATTTTTCTGGAGATGTTGATTGGGCCATTTTTTCTACGCTTACTCGTGACGGG
CGAGCCATTACACGAAGCAATGGCGGTGCAGGTAATTGATCTGCTCTTACAGCATTAA

Upstream 100 bases:

>100_bases
TTTGCGCCTGTAAACGCAACTCTCTTGCATTATGCTTTACTATAGAGTACTTTTTGGCTTAATGCAAGTCTCTTGCATTA
GCTGCGGAAGGATCGAACCC

Downstream 100 bases:

>100_bases
ATAAACAACGCAATCGTATTAACCGATTGCGTTGCTTTTTGGCTCAATTAAATTTATTGGCCTTGTTGACGTTCGTTTTG
CTCACGAGCTTTTTCAACTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKSEPSEGSDEPNVYQSLLHRQRPGGRSAKVHAAVLQATGELLFEQGYAQLRIADVAQRAGVHETSIYRRWKTKAMLVAD
TVLALFDQHVPNPDTGSFREDVLSFLPSLVRYLQSPEGEALGRACVDVSNLAEAAEARQAVWGIWVDQFGVLVERAIARG
ELPATINAQIFLEMLIGPFFLRLLVTGEPLHEAMAVQVIDLLLQH

Sequences:

>Translated_205_residues
MKSEPSEGSDEPNVYQSLLHRQRPGGRSAKVHAAVLQATGELLFEQGYAQLRIADVAQRAGVHETSIYRRWKTKAMLVAD
TVLALFDQHVPNPDTGSFREDVLSFLPSLVRYLQSPEGEALGRACVDVSNLAEAAEARQAVWGIWVDQFGVLVERAIARG
ELPATINAQIFLEMLIGPFFLRLLVTGEPLHEAMAVQVIDLLLQH
>Mature_205_residues
MKSEPSEGSDEPNVYQSLLHRQRPGGRSAKVHAAVLQATGELLFEQGYAQLRIADVAQRAGVHETSIYRRWKTKAMLVAD
TVLALFDQHVPNPDTGSFREDVLSFLPSLVRYLQSPEGEALGRACVDVSNLAEAAEARQAVWGIWVDQFGVLVERAIARG
ELPATINAQIFLEMLIGPFFLRLLVTGEPLHEAMAVQVIDLLLQH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22653; Mature: 22653

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSEPSEGSDEPNVYQSLLHRQRPGGRSAKVHAAVLQATGELLFEQGYAQLRIADVAQRA
CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC
GVHETSIYRRWKTKAMLVADTVLALFDQHVPNPDTGSFREDVLSFLPSLVRYLQSPEGEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
LGRACVDVSNLAEAAEARQAVWGIWVDQFGVLVERAIARGELPATINAQIFLEMLIGPFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LRLLVTGEPLHEAMAVQVIDLLLQH
HHHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSEPSEGSDEPNVYQSLLHRQRPGGRSAKVHAAVLQATGELLFEQGYAQLRIADVAQRA
CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC
GVHETSIYRRWKTKAMLVADTVLALFDQHVPNPDTGSFREDVLSFLPSLVRYLQSPEGEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
LGRACVDVSNLAEAAEARQAVWGIWVDQFGVLVERAIARGELPATINAQIFLEMLIGPFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LRLLVTGEPLHEAMAVQVIDLLLQH
HHHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]