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The map label for this gene is hofB [C]

Identifier: 159899026

GI number: 159899026

Start: 3202591

End: 3204132

Strand: Direct

Name: hofB [C]

Synonym: Haur_2507

Alternate gene names: 159899026

Gene position: 3202591-3204132 (Clockwise)

Preceding gene: 159899025

Following gene: 159899027

Centisome position: 50.46

GC content: 52.53

Gene sequence:

>1542_bases
ATGTCACTTCTCAAACGTCTTGGAAGCACGCCAACAAGCCCAGAGCCAACTCCTCCTGCTCAGCCAGTTCAACCGATGGC
TGGCGAACAATCTATGCCTGAATATCGCTCATCATCGTTGACTCCACTAAGCCCACCACCACCAGCACCATCATCGCCAC
CCATGCCTGGCGGTAACCTCAGTGCTTTGGCTGGCTCTAGCTCAGGGTTAAGTGGCGGTACGATCAACACCAGCGGCTTT
TTGGTCTTGGCTGATCGCGATGCCCATCGCAAAATGCTGGAGCTTTCGCTCTGGATTGTCGATAAAATTCAGGCTTCGGT
TGGTTCGCAAACCCAACTACAACGCAACGAAGATTCGGAGCGCCTCATCCAAGAGCGCTTTACCACCTTTGTGCGTCAAT
CCACTACCAATCTCGACCAAGATGGCACCAAATTGCTCTATCAAATGGTGCTCGATGAATTATTTGGCTTCGGGCCACTT
GAGCAATTGATTCGCGACGATACCATCACTGAAATTATGGTCAACAGCGCCACGGTGGTGTATGTTGAACAAAAAGGTAA
ATTAACCCTTTCGCCAGTCATTTTTGCCTCGGAAGATCATGTGCTCAAAGTGATCGACCGAATTATTCGGCCACTCGGGC
GACGGGTTGACCGCAAATGGCCCATGGTCGATGCGCGTTTGCCCGATGGTTCGCGGGTCAATGCCATCATCCCGCCTTGT
GCAATCGATGGTTCGTCGCTGAGTATTCGTAAATTCTCCAAGAAAAAACTCCAAGTTAGCGATTTGATCAATTATGGCTC
GATGACCAAGGAAATGGCCGACTTCCTGAATGCTTGTGTGGTCAGCGCCATGAACTTAATCGTCTCGGGTGGTACTGGTT
CGGGTAAAACCACACTCCTAAACGTGCTCTCCAACTTCATCCCCGACCACTATCGGATTTGTACAATTGAAGACTCAGCC
GAACTACAACTTGGTAAAGATCACGTGATTCGGCTTGAATCCAAGCCTGCCGATGTTGATGGCTCGGGCTTGGTCACCAT
CCGCGACCTTGTGAAGAACTCGCTGCGGATGCGCCCTGACCGCATTGTGGTAGGGGAAATTCGTGACGGCGCGGCGCTCG
ACTTGCTCCAAGCCATGAACACTGGCCACGACGGCTCAATGTCCACCGTCCACGCCAACACCCCACGCGACGCAATTCGC
CGTTTGGAAACCTTGGCACTGATGTCGGGACTCGATTTACCAGTTGCGGTTATTCGCGAACAAATTGCTTCGGCAGTACA
CGTGATTGTGCAGCAAGCCCGTTTGCGCGACGGCTCACGGAAAGTCGTAGCGGTAACTGAAGTTCAAGGCATGGAAAGTG
GTCAGGTCGTGCTACAAGATATCTTCATCTTTGAAGATCAAGGTACTGCGCCAGATGGCAAAGTGATGGGTGTGCTGCGG
CCAACCGGGACGCGTCCACGCTTTACGCCAGTGCTCGAAGCCAAAGGCTTCAAATTGCCTCCATCAATCTTCGGCGCAAC
CTTCCCCGGCATGCGGCGCTAA

Upstream 100 bases:

>100_bases
TGATGAAGCGAAATATCGTGGTCAACAGCCCCAAATGAACAAAGAACTTTTGGATCGGGCTTGCGAAGCCTATTTTGTCA
AAATGTAGCGAGGTCAAGTT

Downstream 100 bases:

>100_bases
ATTAATAGCTTGTTTCATTCATCAACCCGTAGGATTTAATATTCTACGGGTTGTTTGGCGCTCACAGGGTGTGCTATGAT
CGGTAGTAAGAATCATTCAT

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 512

Protein sequence:

>513_residues
MSLLKRLGSTPTSPEPTPPAQPVQPMAGEQSMPEYRSSSLTPLSPPPPAPSSPPMPGGNLSALAGSSSGLSGGTINTSGF
LVLADRDAHRKMLELSLWIVDKIQASVGSQTQLQRNEDSERLIQERFTTFVRQSTTNLDQDGTKLLYQMVLDELFGFGPL
EQLIRDDTITEIMVNSATVVYVEQKGKLTLSPVIFASEDHVLKVIDRIIRPLGRRVDRKWPMVDARLPDGSRVNAIIPPC
AIDGSSLSIRKFSKKKLQVSDLINYGSMTKEMADFLNACVVSAMNLIVSGGTGSGKTTLLNVLSNFIPDHYRICTIEDSA
ELQLGKDHVIRLESKPADVDGSGLVTIRDLVKNSLRMRPDRIVVGEIRDGAALDLLQAMNTGHDGSMSTVHANTPRDAIR
RLETLALMSGLDLPVAVIREQIASAVHVIVQQARLRDGSRKVVAVTEVQGMESGQVVLQDIFIFEDQGTAPDGKVMGVLR
PTGTRPRFTPVLEAKGFKLPPSIFGATFPGMRR

Sequences:

>Translated_513_residues
MSLLKRLGSTPTSPEPTPPAQPVQPMAGEQSMPEYRSSSLTPLSPPPPAPSSPPMPGGNLSALAGSSSGLSGGTINTSGF
LVLADRDAHRKMLELSLWIVDKIQASVGSQTQLQRNEDSERLIQERFTTFVRQSTTNLDQDGTKLLYQMVLDELFGFGPL
EQLIRDDTITEIMVNSATVVYVEQKGKLTLSPVIFASEDHVLKVIDRIIRPLGRRVDRKWPMVDARLPDGSRVNAIIPPC
AIDGSSLSIRKFSKKKLQVSDLINYGSMTKEMADFLNACVVSAMNLIVSGGTGSGKTTLLNVLSNFIPDHYRICTIEDSA
ELQLGKDHVIRLESKPADVDGSGLVTIRDLVKNSLRMRPDRIVVGEIRDGAALDLLQAMNTGHDGSMSTVHANTPRDAIR
RLETLALMSGLDLPVAVIREQIASAVHVIVQQARLRDGSRKVVAVTEVQGMESGQVVLQDIFIFEDQGTAPDGKVMGVLR
PTGTRPRFTPVLEAKGFKLPPSIFGATFPGMRR
>Mature_512_residues
SLLKRLGSTPTSPEPTPPAQPVQPMAGEQSMPEYRSSSLTPLSPPPPAPSSPPMPGGNLSALAGSSSGLSGGTINTSGFL
VLADRDAHRKMLELSLWIVDKIQASVGSQTQLQRNEDSERLIQERFTTFVRQSTTNLDQDGTKLLYQMVLDELFGFGPLE
QLIRDDTITEIMVNSATVVYVEQKGKLTLSPVIFASEDHVLKVIDRIIRPLGRRVDRKWPMVDARLPDGSRVNAIIPPCA
IDGSSLSIRKFSKKKLQVSDLINYGSMTKEMADFLNACVVSAMNLIVSGGTGSGKTTLLNVLSNFIPDHYRICTIEDSAE
LQLGKDHVIRLESKPADVDGSGLVTIRDLVKNSLRMRPDRIVVGEIRDGAALDLLQAMNTGHDGSMSTVHANTPRDAIRR
LETLALMSGLDLPVAVIREQIASAVHVIVQQARLRDGSRKVVAVTEVQGMESGQVVLQDIFIFEDQGTAPDGKVMGVLRP
TGTRPRFTPVLEAKGFKLPPSIFGATFPGMRR

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=200, Percent_Identity=28, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 55748; Mature: 55617

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS00018 EF_HAND_1 ; PS00227 TUBULIN ; PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLKRLGSTPTSPEPTPPAQPVQPMAGEQSMPEYRSSSLTPLSPPPPAPSSPPMPGGNL
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
SALAGSSSGLSGGTINTSGFLVLADRDAHRKMLELSLWIVDKIQASVGSQTQLQRNEDSE
EEECCCCCCCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHH
RLIQERFTTFVRQSTTNLDQDGTKLLYQMVLDELFGFGPLEQLIRDDTITEIMVNSATVV
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHEECCEEEE
YVEQKGKLTLSPVIFASEDHVLKVIDRIIRPLGRRVDRKWPMVDARLPDGSRVNAIIPPC
EEECCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCC
AIDGSSLSIRKFSKKKLQVSDLINYGSMTKEMADFLNACVVSAMNLIVSGGTGSGKTTLL
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHH
NVLSNFIPDHYRICTIEDSAELQLGKDHVIRLESKPADVDGSGLVTIRDLVKNSLRMRPD
HHHHHHCCCCEEEEEECCCCCEEECCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHCCCC
RIVVGEIRDGAALDLLQAMNTGHDGSMSTVHANTPRDAIRRLETLALMSGLDLPVAVIRE
EEEEEECCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHH
QIASAVHVIVQQARLRDGSRKVVAVTEVQGMESGQVVLQDIFIFEDQGTAPDGKVMGVLR
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCEEEEEC
PTGTRPRFTPVLEAKGFKLPPSIFGATFPGMRR
CCCCCCCCCEEECCCCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure 
SLLKRLGSTPTSPEPTPPAQPVQPMAGEQSMPEYRSSSLTPLSPPPPAPSSPPMPGGNL
CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
SALAGSSSGLSGGTINTSGFLVLADRDAHRKMLELSLWIVDKIQASVGSQTQLQRNEDSE
EEECCCCCCCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHH
RLIQERFTTFVRQSTTNLDQDGTKLLYQMVLDELFGFGPLEQLIRDDTITEIMVNSATVV
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHEECCEEEE
YVEQKGKLTLSPVIFASEDHVLKVIDRIIRPLGRRVDRKWPMVDARLPDGSRVNAIIPPC
EEECCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCC
AIDGSSLSIRKFSKKKLQVSDLINYGSMTKEMADFLNACVVSAMNLIVSGGTGSGKTTLL
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHH
NVLSNFIPDHYRICTIEDSAELQLGKDHVIRLESKPADVDGSGLVTIRDLVKNSLRMRPD
HHHHHHCCCCEEEEEECCCCCEEECCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHCCCC
RIVVGEIRDGAALDLLQAMNTGHDGSMSTVHANTPRDAIRRLETLALMSGLDLPVAVIRE
EEEEEECCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHH
QIASAVHVIVQQARLRDGSRKVVAVTEVQGMESGQVVLQDIFIFEDQGTAPDGKVMGVLR
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCEEEEEC
PTGTRPRFTPVLEAKGFKLPPSIFGATFPGMRR
CCCCCCCCCEEECCCCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]