| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159899024
Identifier: 159899024
GI number: 159899024
Start: 3200201
End: 3201010
Strand: Direct
Name: 159899024
Synonym: Haur_2505
Alternate gene names: NA
Gene position: 3200201-3201010 (Clockwise)
Preceding gene: 159899023
Following gene: 159899025
Centisome position: 50.42
GC content: 50.0
Gene sequence:
>810_bases ATGGCTACATCCAAACCCCAATTATCACCACTTGTTCGCATCATGTTTATCGTTGTTGCCTTGGTATTGGTCGCTGGCGT GTCACTGTTGATCGCCCCAAGTTTAGTCGGGCCACGTTGGCCATGGGCCTTACGGCCATTTGCAACCCGTTTTTTAGGCG CAGTCTATGCTGCCGAAATGGTGGCGGTGCTCTTTACGCTTGTGATTAACGATTGGTCAGTAGCCCGATTAACCATCCCA CAAGCCGTCACCTTCACCACAGTTGTCACGGGCGCATCGCTGGTTTGGATCAATAATTTCGATTTTTCACGGGTGATCGT TTGGCTATGGTTTATCATCTACACCCTGCCTACCTTGGCTTTAGGTTGGTTTTGGTGGCAATATCGCGCTTGGCCAGCGG TCAACCCGCAGCCATTAGGCCGATTACGCAGCATCTTATTAATTGAGGCAGCTGTTTTAGGTAGCTATGGTTTAGCCAGC ATTATTGCCCCCAATTGGGCCACAGCGTTTTGGCCATGGAAGATTGATGCCTTTCATGCCCAAATTTATAGTGCTTTGTT TATGACCGGAGCAATCGGAGCATGGATTGTGGCAGGTGGTGGCAATCGTTATGAACTACTGACCCTCGGTTGGAGCCAGG TCGTACTAGGATTAGGCGTAATTGCCGCCTTAGCCATCGTCGAGTTTGGACCAGACAACCTGAGCGTACCCTGGGCAAGC ATCGGAACAATTATTTGGGTTGCAAGCTTTGGATTAATTGCGCTAGTTGGGGGAGTTTTAATTGGGCGTGGAATGCGGCA ACGGAGCTAA
Upstream 100 bases:
>100_bases GGTTACTCGGCGCTGGCCCCTAACTCTCATCAAGCCATCATTGTCAGAGCCAAGCTCAGCATGCTAGACTGACAGCAGTT TTGCCAACAGGAGCATTGCT
Downstream 100 bases:
>100_bases TTGGGCGGGTCCACTTCTCCCCGCTTCCCTCGGGCTCGAAACCTCAAGCCCGCGCTACGCCTCGTCGTGCATTGTACCAC AACTCTCGGTTGCCCGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MATSKPQLSPLVRIMFIVVALVLVAGVSLLIAPSLVGPRWPWALRPFATRFLGAVYAAEMVAVLFTLVINDWSVARLTIP QAVTFTTVVTGASLVWINNFDFSRVIVWLWFIIYTLPTLALGWFWWQYRAWPAVNPQPLGRLRSILLIEAAVLGSYGLAS IIAPNWATAFWPWKIDAFHAQIYSALFMTGAIGAWIVAGGGNRYELLTLGWSQVVLGLGVIAALAIVEFGPDNLSVPWAS IGTIIWVASFGLIALVGGVLIGRGMRQRS
Sequences:
>Translated_269_residues MATSKPQLSPLVRIMFIVVALVLVAGVSLLIAPSLVGPRWPWALRPFATRFLGAVYAAEMVAVLFTLVINDWSVARLTIP QAVTFTTVVTGASLVWINNFDFSRVIVWLWFIIYTLPTLALGWFWWQYRAWPAVNPQPLGRLRSILLIEAAVLGSYGLAS IIAPNWATAFWPWKIDAFHAQIYSALFMTGAIGAWIVAGGGNRYELLTLGWSQVVLGLGVIAALAIVEFGPDNLSVPWAS IGTIIWVASFGLIALVGGVLIGRGMRQRS >Mature_268_residues ATSKPQLSPLVRIMFIVVALVLVAGVSLLIAPSLVGPRWPWALRPFATRFLGAVYAAEMVAVLFTLVINDWSVARLTIPQ AVTFTTVVTGASLVWINNFDFSRVIVWLWFIIYTLPTLALGWFWWQYRAWPAVNPQPLGRLRSILLIEAAVLGSYGLASI IAPNWATAFWPWKIDAFHAQIYSALFMTGAIGAWIVAGGGNRYELLTLGWSQVVLGLGVIAALAIVEFGPDNLSVPWASI GTIIWVASFGLIALVGGVLIGRGMRQRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29408; Mature: 29277
Theoretical pI: Translated: 10.73; Mature: 10.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSKPQLSPLVRIMFIVVALVLVAGVSLLIAPSLVGPRWPWALRPFATRFLGAVYAAEM CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH VAVLFTLVINDWSVARLTIPQAVTFTTVVTGASLVWINNFDFSRVIVWLWFIIYTLPTLA HHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH LGWFWWQYRAWPAVNPQPLGRLRSILLIEAAVLGSYGLASIIAPNWATAFWPWKIDAFHA HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCHHHHHH QIYSALFMTGAIGAWIVAGGGNRYELLTLGWSQVVLGLGVIAALAIVEFGPDNLSVPWAS HHHHHHHHHHCHHHEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH IGTIIWVASFGLIALVGGVLIGRGMRQRS HHHHHHHHHHHHHHHHHHHHHCCCHHCCC >Mature Secondary Structure ATSKPQLSPLVRIMFIVVALVLVAGVSLLIAPSLVGPRWPWALRPFATRFLGAVYAAEM CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH VAVLFTLVINDWSVARLTIPQAVTFTTVVTGASLVWINNFDFSRVIVWLWFIIYTLPTLA HHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH LGWFWWQYRAWPAVNPQPLGRLRSILLIEAAVLGSYGLASIIAPNWATAFWPWKIDAFHA HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCHHHHHH QIYSALFMTGAIGAWIVAGGGNRYELLTLGWSQVVLGLGVIAALAIVEFGPDNLSVPWAS HHHHHHHHHHCHHHEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH IGTIIWVASFGLIALVGGVLIGRGMRQRS HHHHHHHHHHHHHHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA