| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is thiED [H]
Identifier: 159898960
GI number: 159898960
Start: 3124232
End: 3124861
Strand: Reverse
Name: thiED [H]
Synonym: Haur_2439
Alternate gene names: 159898960
Gene position: 3124861-3124232 (Counterclockwise)
Preceding gene: 159898961
Following gene: 159898959
Centisome position: 49.24
GC content: 50.32
Gene sequence:
>630_bases ATGGTGTTTATGGATTATGCGGCGAATTTTTGGCAGGCAAATCGTTTATTAGCCCAAGCTTGTTTGCAGCACCCGTTTGT GCAGGGGCTGGCAACTGGCCAACTGAGCGTCGAACGCTTTGCCGATTATATTGGCCAAGATAGCTTTTTTCTGCAAAGTT TTGCGCGGGCGTATAGTTTGGCAGCGGCCAAAGCACCAAATTGGGCGAGCGTGTGCACCTTTCATCAGCTAGCTGGCGGC GTGATCCAAGAGTTACAACTGCATCAAGCCTTTGCCGCCGACTGGCAGGTTGATTTAAATGTGGTGCAGCCCAACCCAGC GACCCAGCGCTACACCGATTTTCTGCAACTGACGGCGTGGTCGAGTGATTTGGGCACATTGGCGGCAGCGATGGCTCCCT GTATGCGTTTATATGCCTACCTTGGACAGAATTTAGCGAGTACCCAAGCCGCTAGTCAGCGCTATAGTGCTTGGATCGAA ACCTATAGCAGCAACGAATTTGAAGCCTTGGTAAGGCAATTGGAGCAACTGGTCAATCAACATAGCTACAATTTGGCCAG TGCCGCTCAGGCCTATCGCTATGCCATGCAATGTGAATACGATTTTTTTGAAGCAGTGTGGAGTAACTAA
Upstream 100 bases:
>100_bases CCCGCCTTGAGGCGGGACGGAAGGGTGGTAATCACCCATGATTGTAAAAAACCTACCCTTGAAAGATGGTGGCTAGGGGG TGAGGGGTCATTAATTAAGG
Downstream 100 bases:
>100_bases ATGCGAGCAAAAGCATTAACTATCGCTGGCTCCGATTCGGGTGGCGGCGCGGGCATTCAGGCCGATCTCAAAACCTTTCA TACCTATCAAGTTTATGGTA
Product: TenA family transcription regulator
Products: NA
Alternate protein names: Thiamine-phosphate pyrophosphorylase; TMP pyrophosphorylase; TMP-PPase; Thiamine-phosphate synthase; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Hydroxymethylpyrimidine kinase; HMP kinase; Hydroxymethylpyrimidine phosphate kinase; HMP-P kinase; HMP-phosphate kinase; HMPP kinase [H]
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MVFMDYAANFWQANRLLAQACLQHPFVQGLATGQLSVERFADYIGQDSFFLQSFARAYSLAAAKAPNWASVCTFHQLAGG VIQELQLHQAFAADWQVDLNVVQPNPATQRYTDFLQLTAWSSDLGTLAAAMAPCMRLYAYLGQNLASTQAASQRYSAWIE TYSSNEFEALVRQLEQLVNQHSYNLASAAQAYRYAMQCEYDFFEAVWSN
Sequences:
>Translated_209_residues MVFMDYAANFWQANRLLAQACLQHPFVQGLATGQLSVERFADYIGQDSFFLQSFARAYSLAAAKAPNWASVCTFHQLAGG VIQELQLHQAFAADWQVDLNVVQPNPATQRYTDFLQLTAWSSDLGTLAAAMAPCMRLYAYLGQNLASTQAASQRYSAWIE TYSSNEFEALVRQLEQLVNQHSYNLASAAQAYRYAMQCEYDFFEAVWSN >Mature_209_residues MVFMDYAANFWQANRLLAQACLQHPFVQGLATGQLSVERFADYIGQDSFFLQSFARAYSLAAAKAPNWASVCTFHQLAGG VIQELQLHQAFAADWQVDLNVVQPNPATQRYTDFLQLTAWSSDLGTLAAAMAPCMRLYAYLGQNLASTQAASQRYSAWIE TYSSNEFEALVRQLEQLVNQHSYNLASAAQAYRYAMQCEYDFFEAVWSN
Specific function: Catalyzes the phosphorylation of hydroxymethylpyrimidine phosphate (HMP-P) to HMP-PP, and of HMP to HMP-P [H]
COG id: COG0819
COG function: function code K; Putative transcription activator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the thiaminase-2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR016084 - InterPro: IPR013749 - InterPro: IPR004399 - InterPro: IPR004305 - InterPro: IPR022998 - InterPro: IPR003733 [H]
Pfam domain/function: PF08543 Phos_pyr_kin; PF03070 TENA_THI-4; PF02581 TMP-TENI [H]
EC number: =2.5.1.3; =2.7.1.49; =2.7.4.7 [H]
Molecular weight: Translated: 23521; Mature: 23521
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFMDYAANFWQANRLLAQACLQHPFVQGLATGQLSVERFADYIGQDSFFLQSFARAYSL CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH AAAKAPNWASVCTFHQLAGGVIQELQLHQAFAADWQVDLNVVQPNPATQRYTDFLQLTAW HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHC SSDLGTLAAAMAPCMRLYAYLGQNLASTQAASQRYSAWIETYSSNEFEALVRQLEQLVNQ CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH HSYNLASAAQAYRYAMQCEYDFFEAVWSN HCCCHHHHHHHHHHHHHCCHHHHHHHHCC >Mature Secondary Structure MVFMDYAANFWQANRLLAQACLQHPFVQGLATGQLSVERFADYIGQDSFFLQSFARAYSL CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH AAAKAPNWASVCTFHQLAGGVIQELQLHQAFAADWQVDLNVVQPNPATQRYTDFLQLTAW HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHC SSDLGTLAAAMAPCMRLYAYLGQNLASTQAASQRYSAWIETYSSNEFEALVRQLEQLVNQ CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH HSYNLASAAQAYRYAMQCEYDFFEAVWSN HCCCHHHHHHHHHHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12840036 [H]