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The map label for this gene is pchR [H]

Identifier: 159898853

GI number: 159898853

Start: 2977744

End: 2978679

Strand: Direct

Name: pchR [H]

Synonym: Haur_2332

Alternate gene names: 159898853

Gene position: 2977744-2978679 (Clockwise)

Preceding gene: 159898852

Following gene: 159898854

Centisome position: 46.92

GC content: 53.31

Gene sequence:

>936_bases
ATGAATGGATTGGTGCGTTTTCGGAATAACTTGCAATGGGCGACAACGCTGCCGCTCTTTCGCCGCCCAGGCCTGACCAT
CGAACGTCGGCGCTTTACCGACCAACGCCCGCTGATGCCGCAAATCGAGCGTTGGCGCAGTTGGTCGATGCAATTGACCT
TGAGTGGCACACGCTATGTCAGCTATGGCGACCGCAGCTTTTGTCAAGCTCCAACCTCGTTGGTCTTGACTAGCCCGCAG
ATCGACCCGATGCGGATTCGCTACTTGCCTGGTGCAACGACCGATTGGCTCAACTTGACTTGGACGAACGATGGTTGGCA
GCATTTTCTGAACCAACATCCACAATTCAATCAGCGCCATGCCTATTTGATCAAAGATGCAGTTCGTTCGCCCTTGTTGG
CAGTCCGCTACGTGCCACCACCAGCGCTCCATGCAGCCCGTCAATTAATCACGATCGCAGCCCTGCCCGAAGCTCCACCA
GCGACGTTGGAAAACGCGGCCACAACCTTTTTGGCGCTGTTAAGTGCGCTCGATTTCCAAACAACCTTAAATGGTTATGC
ACCAACCCAAGCTCAGTCGGTCGAAAAAGCCCAAGCTTTGATGATGAAAAACTTAGAGCGGCCACCAAGTATTAGTCAAT
TGGCTTCAACCTTACACATCAGCCCACGCCAATTGCAACGTGATTTTCTGGCTTGTACTGGGCTTAGCCCACTTAGTTAT
TTACAAATGTTGCGGCTCAGCGAGGCCAATATGCTGCTTGCCAGCACCAATTTGCCGATTGGAACGATCGCCAGCCGCTT
GGGCTACGCCAGCGCCGCCCACTTTAGCGCCGCCTTCCGCCGTTTATACGATTGCACGCCGCGCCAAATTCGCGAATACG
ACGATGACTTGATGCTTGAGGCTGTTATGGAGGAAGCTCATGGCTGTTCAAATTGA

Upstream 100 bases:

>100_bases
GAGGAACACTCCGCCGGAACCGTGCTCGACGTGTGCGTCGCCGGTGAAGGTAGCGGCCTGTTGATTCTCGACATTGGCTA
CCTAGAAGTGTAGGCCGACC

Downstream 100 bases:

>100_bases
AACCATCAAAAAGGTCAAAAATGGGCTTGATGTCTTGCCTGATCTGTATCGCTATGCTCGCTTAGGCTTCGATGCGATTC
CCGAAGATGAGCTTGAGCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNGLVRFRNNLQWATTLPLFRRPGLTIERRRFTDQRPLMPQIERWRSWSMQLTLSGTRYVSYGDRSFCQAPTSLVLTSPQ
IDPMRIRYLPGATTDWLNLTWTNDGWQHFLNQHPQFNQRHAYLIKDAVRSPLLAVRYVPPPALHAARQLITIAALPEAPP
ATLENAATTFLALLSALDFQTTLNGYAPTQAQSVEKAQALMMKNLERPPSISQLASTLHISPRQLQRDFLACTGLSPLSY
LQMLRLSEANMLLASTNLPIGTIASRLGYASAAHFSAAFRRLYDCTPRQIREYDDDLMLEAVMEEAHGCSN

Sequences:

>Translated_311_residues
MNGLVRFRNNLQWATTLPLFRRPGLTIERRRFTDQRPLMPQIERWRSWSMQLTLSGTRYVSYGDRSFCQAPTSLVLTSPQ
IDPMRIRYLPGATTDWLNLTWTNDGWQHFLNQHPQFNQRHAYLIKDAVRSPLLAVRYVPPPALHAARQLITIAALPEAPP
ATLENAATTFLALLSALDFQTTLNGYAPTQAQSVEKAQALMMKNLERPPSISQLASTLHISPRQLQRDFLACTGLSPLSY
LQMLRLSEANMLLASTNLPIGTIASRLGYASAAHFSAAFRRLYDCTPRQIREYDDDLMLEAVMEEAHGCSN
>Mature_311_residues
MNGLVRFRNNLQWATTLPLFRRPGLTIERRRFTDQRPLMPQIERWRSWSMQLTLSGTRYVSYGDRSFCQAPTSLVLTSPQ
IDPMRIRYLPGATTDWLNLTWTNDGWQHFLNQHPQFNQRHAYLIKDAVRSPLLAVRYVPPPALHAARQLITIAALPEAPP
ATLENAATTFLALLSALDFQTTLNGYAPTQAQSVEKAQALMMKNLERPPSISQLASTLHISPRQLQRDFLACTGLSPLSY
LQMLRLSEANMLLASTNLPIGTIASRLGYASAAHFSAAFRRLYDCTPRQIREYDDDLMLEAVMEEAHGCSN

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35199; Mature: 35199

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGLVRFRNNLQWATTLPLFRRPGLTIERRRFTDQRPLMPQIERWRSWSMQLTLSGTRYV
CCCCHHHHCCCCEEEECHHHHCCCCCCHHHHCCCCCCCCHHHHHHCCCEEEEEECCCEEE
SYGDRSFCQAPTSLVLTSPQIDPMRIRYLPGATTDWLNLTWTNDGWQHFLNQHPQFNQRH
ECCCHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCCCH
AYLIKDAVRSPLLAVRYVPPPALHAARQLITIAALPEAPPATLENAATTFLALLSALDFQ
HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHH
TTLNGYAPTQAQSVEKAQALMMKNLERPPSISQLASTLHISPRQLQRDFLACTGLSPLSY
HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
LQMLRLSEANMLLASTNLPIGTIASRLGYASAAHFSAAFRRLYDCTPRQIREYDDDLMLE
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH
AVMEEAHGCSN
HHHHHHCCCCC
>Mature Secondary Structure
MNGLVRFRNNLQWATTLPLFRRPGLTIERRRFTDQRPLMPQIERWRSWSMQLTLSGTRYV
CCCCHHHHCCCCEEEECHHHHCCCCCCHHHHCCCCCCCCHHHHHHCCCEEEEEECCCEEE
SYGDRSFCQAPTSLVLTSPQIDPMRIRYLPGATTDWLNLTWTNDGWQHFLNQHPQFNQRH
ECCCHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCCCH
AYLIKDAVRSPLLAVRYVPPPALHAARQLITIAALPEAPPATLENAATTFLALLSALDFQ
HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHH
TTLNGYAPTQAQSVEKAQALMMKNLERPPSISQLASTLHISPRQLQRDFLACTGLSPLSY
HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
LQMLRLSEANMLLASTNLPIGTIASRLGYASAAHFSAAFRRLYDCTPRQIREYDDDLMLE
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH
AVMEEAHGCSN
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]