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The map label for this gene is sodA [H]

Identifier: 159898815

GI number: 159898815

Start: 2934627

End: 2935394

Strand: Direct

Name: sodA [H]

Synonym: Haur_2294

Alternate gene names: 159898815

Gene position: 2934627-2935394 (Clockwise)

Preceding gene: 159898814

Following gene: 159898817

Centisome position: 46.24

GC content: 50.39

Gene sequence:

>768_bases
ATGTCAGAACGTTTCAATCTATCGCGGCGAGGATTTTTGGGCGCAGTAGGCTTGGGCAGTTTGGCGGCGATTTGGGGCAG
CAAAGGGGCCAGTGCCAAAAAATATGGTGGCGTAGGCAAAACCTTCGATCAAGCTACCGTTCCAACCAATGGCAAATTTA
CACTTCCAGCGTTGCCCTATGATTATGGCGATTTGGAGCCGCACCTCGATGCTGAAACGATGTACATTCATCATCAAAAA
CACCATCAAGCACTTGTTACCAATTTAAATGCAGCCTTGGCCGATTACCCTAAATTGCAAAGCATGAATGTTGCCGAACT
ACTGCATGGCTTGAGCAGCTTGCCGAGCGCGATTCAAACCGCTGTGCGAAACAACGCTGGCGGTCATGCCAACCATGCAA
TTTGGTGGGCAACCCTCTCGCCAAAAGGTGGCGGCAATGCTGGTGGCGCATTGGCCGCTGCAATTAATGCCAAATATGGC
TCATTCAATAGTTTCAAAACCACGTTTAATGATATTGCGGCACGGCGGTTTGGTTCAGGCTGGGGTTGGCTCTCAACCGA
TAGCAAAGGCACGCTCTATCTGGCCAGCTATCCCAACCAAGATAGCCCGTATATGGAAGGCTTAACCCCGTTGCTTGGGG
TTGATGTGTGGGAGCATGCCTACTACTTGAAGTTCCGCCAAAAACGCGCCGAATTTTTGAGCGCTTGGTGGAATGTGATC
AATTGGGGCGAAGTTGGGCGACGCTACGATCTGGCAATCGCTAAATAA

Upstream 100 bases:

>100_bases
TTCAATAAAATATCAACAATTACCGCTATTTTGGCTAAAACCAAAGCGTGAATTTAGACGAATGGTTGCAACAGGAACTG
TCTATTGGAGGTTGTTGATA

Downstream 100 bases:

>100_bases
TCCAGCAAAACAGGCTGTTGGTATCAATCAACAGCCTGTTTTTATGTCAACTATCTACTGCTCTAAATTAAAGCTAGCTT
GTTGAGTATCGGCTGGGCGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSERFNLSRRGFLGAVGLGSLAAIWGSKGASAKKYGGVGKTFDQATVPTNGKFTLPALPYDYGDLEPHLDAETMYIHHQK
HHQALVTNLNAALADYPKLQSMNVAELLHGLSSLPSAIQTAVRNNAGGHANHAIWWATLSPKGGGNAGGALAAAINAKYG
SFNSFKTTFNDIAARRFGSGWGWLSTDSKGTLYLASYPNQDSPYMEGLTPLLGVDVWEHAYYLKFRQKRAEFLSAWWNVI
NWGEVGRRYDLAIAK

Sequences:

>Translated_255_residues
MSERFNLSRRGFLGAVGLGSLAAIWGSKGASAKKYGGVGKTFDQATVPTNGKFTLPALPYDYGDLEPHLDAETMYIHHQK
HHQALVTNLNAALADYPKLQSMNVAELLHGLSSLPSAIQTAVRNNAGGHANHAIWWATLSPKGGGNAGGALAAAINAKYG
SFNSFKTTFNDIAARRFGSGWGWLSTDSKGTLYLASYPNQDSPYMEGLTPLLGVDVWEHAYYLKFRQKRAEFLSAWWNVI
NWGEVGRRYDLAIAK
>Mature_254_residues
SERFNLSRRGFLGAVGLGSLAAIWGSKGASAKKYGGVGKTFDQATVPTNGKFTLPALPYDYGDLEPHLDAETMYIHHQKH
HQALVTNLNAALADYPKLQSMNVAELLHGLSSLPSAIQTAVRNNAGGHANHAIWWATLSPKGGGNAGGALAAAINAKYGS
FNSFKTTFNDIAARRFGSGWGWLSTDSKGTLYLASYPNQDSPYMEGLTPLLGVDVWEHAYYLKFRQKRAEFLSAWWNVIN
WGEVGRRYDLAIAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=47.5, Blast_Score=184, Evalue=5e-47,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=47.5, Blast_Score=184, Evalue=5e-47,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=39.5, Blast_Score=135, Evalue=4e-32,
Organism=Escherichia coli, GI1790342, Length=203, Percent_Identity=48.7684729064039, Blast_Score=200, Evalue=8e-53,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=41.8367346938776, Blast_Score=154, Evalue=6e-39,
Organism=Caenorhabditis elegans, GI17569479, Length=210, Percent_Identity=40, Blast_Score=156, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=40.7960199004975, Blast_Score=153, Evalue=8e-38,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=35.5450236966825, Blast_Score=140, Evalue=2e-34,
Organism=Drosophila melanogaster, GI17136812, Length=215, Percent_Identity=41.3953488372093, Blast_Score=163, Evalue=9e-41,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 27780; Mature: 27648

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERFNLSRRGFLGAVGLGSLAAIWGSKGASAKKYGGVGKTFDQATVPTNGKFTLPALPY
CCCCCCCCCCCCEECCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCC
DYGDLEPHLDAETMYIHHQKHHQALVTNLNAALADYPKLQSMNVAELLHGLSSLPSAIQT
CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
AVRNNAGGHANHAIWWATLSPKGGGNAGGALAAAINAKYGSFNSFKTTFNDIAARRFGSG
HHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
WGWLSTDSKGTLYLASYPNQDSPYMEGLTPLLGVDVWEHAYYLKFRQKRAEFLSAWWNVI
CCEECCCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NWGEVGRRYDLAIAK
HHHHCCCEEEEEECC
>Mature Secondary Structure 
SERFNLSRRGFLGAVGLGSLAAIWGSKGASAKKYGGVGKTFDQATVPTNGKFTLPALPY
CCCCCCCCCCCEECCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCC
DYGDLEPHLDAETMYIHHQKHHQALVTNLNAALADYPKLQSMNVAELLHGLSSLPSAIQT
CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
AVRNNAGGHANHAIWWATLSPKGGGNAGGALAAAINAKYGSFNSFKTTFNDIAARRFGSG
HHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
WGWLSTDSKGTLYLASYPNQDSPYMEGLTPLLGVDVWEHAYYLKFRQKRAEFLSAWWNVI
CCEECCCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NWGEVGRRYDLAIAK
HHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]