| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159898809
Identifier: 159898809
GI number: 159898809
Start: 2927347
End: 2927949
Strand: Reverse
Name: 159898809
Synonym: Haur_2288
Alternate gene names: NA
Gene position: 2927949-2927347 (Counterclockwise)
Preceding gene: 159898816
Following gene: 159898807
Centisome position: 46.13
GC content: 55.06
Gene sequence:
>603_bases ATGCCCACAGACGACAGTATCATCCGCGTGTTTTGTATTGTCGATGATCGGCTCGCTGCTGTCAAAAAGCATCCACTGGC CAATCTTCATCCGAGTGAAGTTGTCACCATTGGGTTGTTGTTGGCCCTCAAAGGTCGCAGTTATCGCGCCTTTTATCGCT GGTTGTCGGCCAATTACCGCCATCTCTTCCCCGCATTGCCAGAACAATCGCGGCTGTATCGGGTGCTGGTCAAGGCGCAT GGGTATACCGACCAGTTTTTGGCCGATCCCACGATCCTTGGCATTATTGACTCTATTGGGATTGCGGTGATCCATCCCCG GCGCGAAGGGCGGAGCAGCGCACCTCTAGGCAAGAAAGGCATCTCAAATCACCGCTGGATCGTGGGCATTAAGCTGGCAT GGCTGATTAATCAGCGCGGCGAGGTCGTCGAATGGTCGTGGCTCCCCGCCAACGTCAGTGATCAGGAATTTCGCGATGTC GTTGCATGGCGGGCCGGGCAAACGATTGCGCTTGGTGATCGTGGGTTTCGCGTTCGCGCTGACGAGGATGATGGCGTGCC GATTAAAATCTGTGGTCAAGGTGACTGGAACTGCCGTTTTTGA
Upstream 100 bases:
>100_bases GTGTTTTGTCGCTTGTTCGTATCCATGGCCATGGATTCGCAAAAAACAAACTCGTCCTCTATGATGGGAGTGCTGAAATC ACATCATCCGGAGAACGAGT
Downstream 100 bases:
>100_bases TTGAAACCACCTTTAGTTTGTTGGAACGGGTCTTTCAGATCAAGAAACTCACCCATCGAACGGCACGCGGCATGGATATG CGGTTGGGCTTTGTTGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MPTDDSIIRVFCIVDDRLAAVKKHPLANLHPSEVVTIGLLLALKGRSYRAFYRWLSANYRHLFPALPEQSRLYRVLVKAH GYTDQFLADPTILGIIDSIGIAVIHPRREGRSSAPLGKKGISNHRWIVGIKLAWLINQRGEVVEWSWLPANVSDQEFRDV VAWRAGQTIALGDRGFRVRADEDDGVPIKICGQGDWNCRF
Sequences:
>Translated_200_residues MPTDDSIIRVFCIVDDRLAAVKKHPLANLHPSEVVTIGLLLALKGRSYRAFYRWLSANYRHLFPALPEQSRLYRVLVKAH GYTDQFLADPTILGIIDSIGIAVIHPRREGRSSAPLGKKGISNHRWIVGIKLAWLINQRGEVVEWSWLPANVSDQEFRDV VAWRAGQTIALGDRGFRVRADEDDGVPIKICGQGDWNCRF >Mature_199_residues PTDDSIIRVFCIVDDRLAAVKKHPLANLHPSEVVTIGLLLALKGRSYRAFYRWLSANYRHLFPALPEQSRLYRVLVKAHG YTDQFLADPTILGIIDSIGIAVIHPRREGRSSAPLGKKGISNHRWIVGIKLAWLINQRGEVVEWSWLPANVSDQEFRDVV AWRAGQTIALGDRGFRVRADEDDGVPIKICGQGDWNCRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22608; Mature: 22477
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTDDSIIRVFCIVDDRLAAVKKHPLANLHPSEVVTIGLLLALKGRSYRAFYRWLSANYR CCCCCCEEEEEEEECCHHHHHHCCCCCCCCHHHHHHEEHHEEECCCCHHHHHHHHHCCCC HLFPALPEQSRLYRVLVKAHGYTDQFLADPTILGIIDSIGIAVIHPRREGRSSAPLGKKG EECCCCCCHHHHHHHHHHHCCCCHHHHCCCHHEEHHHCCCEEEEECCCCCCCCCCCCCCC ISNHRWIVGIKLAWLINQRGEVVEWSWLPANVSDQEFRDVVAWRAGQTIALGDRGFRVRA CCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCEEEEC DEDDGVPIKICGQGDWNCRF CCCCCCEEEEECCCCCCCCC >Mature Secondary Structure PTDDSIIRVFCIVDDRLAAVKKHPLANLHPSEVVTIGLLLALKGRSYRAFYRWLSANYR CCCCCEEEEEEEECCHHHHHHCCCCCCCCHHHHHHEEHHEEECCCCHHHHHHHHHCCCC HLFPALPEQSRLYRVLVKAHGYTDQFLADPTILGIIDSIGIAVIHPRREGRSSAPLGKKG EECCCCCCHHHHHHHHHHHCCCCHHHHCCCHHEEHHHCCCEEEEECCCCCCCCCCCCCCC ISNHRWIVGIKLAWLINQRGEVVEWSWLPANVSDQEFRDVVAWRAGQTIALGDRGFRVRA CCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCEEEEC DEDDGVPIKICGQGDWNCRF CCCCCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA