| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159898707
Identifier: 159898707
GI number: 159898707
Start: 2771733
End: 2772065
Strand: Direct
Name: 159898707
Synonym: Haur_2186
Alternate gene names: NA
Gene position: 2771733-2772065 (Clockwise)
Preceding gene: 159898706
Following gene: 159898708
Centisome position: 43.67
GC content: 42.64
Gene sequence:
>333_bases ATGAATCGGCGACTTGACCCAGCCTATAAAACCGAAATTTTGTATCTCGAAGGCCGTTTTGATGTGCATAGCCTGATTCA ATTACGTACATGGCAGCCGAATGCCACCATGCCGCATATTATTTTAGAGTTAAGCCAAGTTAATTTTGTTGACTCGGCAG CCTTAGCTTGGATGGTACGCTTAAACAAGAATGTTAGCAATATCCAGGGAAGCTTAACCATTTGTGGATTGCAACAACCA GTTCAAATTATTCTAGAGCTAACTCGACTTGATCGCGTGTTATCGCTCACCGAAACACTTGATCAGGCTCTTGCAAAAGT TGGCGAATACTAG
Upstream 100 bases:
>100_bases GTGGCTTACCAATTAGTGATGTTGCTGATTGGTATCTTTTGCATCTGCAAACCTTGCTGCGTCAGCCAGCAATTGCACCA AGATTTCAACAGGAGGTTTT
Downstream 100 bases:
>100_bases TTGGCGAATGCACATGAACATGCTTTTACAAAACATCCCAGCGTTTGAAACCATTGCCACGGCTTGGCTCAAAACGGGCA TTCAAGCATTTGGCTTATGG
Product: anti-sigma-factor antagonist
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 110; Mature: 110
Protein sequence:
>110_residues MNRRLDPAYKTEILYLEGRFDVHSLIQLRTWQPNATMPHIILELSQVNFVDSAALAWMVRLNKNVSNIQGSLTICGLQQP VQIILELTRLDRVLSLTETLDQALAKVGEY
Sequences:
>Translated_110_residues MNRRLDPAYKTEILYLEGRFDVHSLIQLRTWQPNATMPHIILELSQVNFVDSAALAWMVRLNKNVSNIQGSLTICGLQQP VQIILELTRLDRVLSLTETLDQALAKVGEY >Mature_110_residues MNRRLDPAYKTEILYLEGRFDVHSLIQLRTWQPNATMPHIILELSQVNFVDSAALAWMVRLNKNVSNIQGSLTICGLQQP VQIILELTRLDRVLSLTETLDQALAKVGEY
Specific function: Unknown
COG id: COG1366
COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12563; Mature: 12563
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50801 STAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRRLDPAYKTEILYLEGRFDVHSLIQLRTWQPNATMPHIILELSQVNFVDSAALAWMVR CCCCCCCCCCEEEEEEECCCCHHHHHHEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH LNKNVSNIQGSLTICGLQQPVQIILELTRLDRVLSLTETLDQALAKVGEY HCCCHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNRRLDPAYKTEILYLEGRFDVHSLIQLRTWQPNATMPHIILELSQVNFVDSAALAWMVR CCCCCCCCCCEEEEEEECCCCHHHHHHEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH LNKNVSNIQGSLTICGLQQPVQIILELTRLDRVLSLTETLDQALAKVGEY HCCCHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA