| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is icfG [H]
Identifier: 159898708
GI number: 159898708
Start: 2772073
End: 2773566
Strand: Direct
Name: icfG [H]
Synonym: Haur_2187
Alternate gene names: 159898708
Gene position: 2772073-2773566 (Clockwise)
Preceding gene: 159898707
Following gene: 159898709
Centisome position: 43.68
GC content: 43.24
Gene sequence:
>1494_bases ATGCACATGAACATGCTTTTACAAAACATCCCAGCGTTTGAAACCATTGCCACGGCTTGGCTCAAAACGGGCATTCAAGC ATTTGGCTTATGGGTTGATAGCCGCTATCAACAAGTTTGGCCGCCGAGTAATACGATCACAACGGTTGCATTTCGTGCGC CGCTAGTTGTAAATGGTCAAGCAATTGGCGAATTACATATTGCCAGCGACCGCCAGAATTGTAGCCAAGAACGACTAGAT GCTGATGCTGGCTTATTAGCGGCACTTTTGCAATATGAACATAATGTCCATTTATTAACTGATGAATTAATTGATTGTCA AGATCAACTTGTTACGTTATATGATATTTGGACTTCTATGGGTCAACATGGTGACTTAACTGCCCTTATGCAATCGCTGA TGCGCGAGGTCGTTCGATTAACCAAAACCTCGAATGCTTGGATTAGTTTTGCTTCAGGTTTAGGCGTACAACATATTATA ACCCATGGTTTTGTGCCAATATCAGAGCAAATGTTGCGCTCAATCCAGACAAATCAGTTTGCACTATTTACCAAACACGA TCCAATTTGTCAACATTTAGATATTGTAAATCTCTTGTGGATGCCTATTACGATTCGTTCAGTAATTATTGCCGGTGGGC TAGGAATTTGCAATAAAACAGGTGAGTTTAGTGCAACCGATATTAAATTTGTTCAAGCAATTTGTGAGCATATTAGCCTT CAACTTGAACAGCAGATGCTTTATCAAGAAAGTTTAGCCAAGGCTCAAATGGAATCCGAGTTAGCCTTGGCGCAACGAGT ACAACAACGTTTGTTGAGCACTCCTCTGCCAAGTGTGGCCGATATACAATTAACTGCCCATGCCAAACCAGCCCGGATTA TTGGGGGCGATTTCTATGATGTGCTTCAACGGCCAGATGGAAGCGTTGCCATTATGGTTGGTGATGTGGTTGGCAAAGGT GTTGCTGCCGCATTATTGATGATGCTAAGCCGAACGGCTCTTAGAAATGCTGCGCTGGCAACCCATGATCCAGCAGCAAT TCTTGAACGTACCAATATGGATCTTTACGACGACTTAACCACGGTTGGGGTATTTATTACGGTCTTTGTGGCAATTTATC ATCCCAAAACCCATATGCTGTGGTATGCAAATGCTGGCCATGCCCCTGTATTGATCTTTCGCAATCAGCAAACCCAGTTG CTCGAAGCTGATTGTCCGCCAATAGGAGTGCTGCCACAACTTTGTGCTGGTAGCCATGCCCAAATTATGAATCCAGGCGA TATCCTGATTGGTGCAACTGATGGCTTTAATGAAACTCATAACCAATATCAAGAGATGTTTGGGTATCAGCGACTCTGCC AACTCCTGACCCAGCATCATGAATTATCAGCAACAGCCTTATGTAACCTTTTCTTTCAGCAAGTTGAGGCCTTTGGCAAT AGTTGTGTTCAAGAAGACGATCGCACAATGATTATATTAAAGACCAACCCATGA
Upstream 100 bases:
>100_bases GTTCAAATTATTCTAGAGCTAACTCGACTTGATCGCGTGTTATCGCTCACCGAAACACTTGATCAGGCTCTTGCAAAAGT TGGCGAATACTAGTTGGCGA
Downstream 100 bases:
>100_bases GGTCGTGTATGGTTGATATTGTTATCCCAGCTAGAATTGATTTGCTTGTCGAGATTGCTAGTACGGTTCGGCGATTCCTC CAAACGTTGCCCATCATTGA
Product: GAF sensor-containing protein serine phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 497; Mature: 497
Protein sequence:
>497_residues MHMNMLLQNIPAFETIATAWLKTGIQAFGLWVDSRYQQVWPPSNTITTVAFRAPLVVNGQAIGELHIASDRQNCSQERLD ADAGLLAALLQYEHNVHLLTDELIDCQDQLVTLYDIWTSMGQHGDLTALMQSLMREVVRLTKTSNAWISFASGLGVQHII THGFVPISEQMLRSIQTNQFALFTKHDPICQHLDIVNLLWMPITIRSVIIAGGLGICNKTGEFSATDIKFVQAICEHISL QLEQQMLYQESLAKAQMESELALAQRVQQRLLSTPLPSVADIQLTAHAKPARIIGGDFYDVLQRPDGSVAIMVGDVVGKG VAAALLMMLSRTALRNAALATHDPAAILERTNMDLYDDLTTVGVFITVFVAIYHPKTHMLWYANAGHAPVLIFRNQQTQL LEADCPPIGVLPQLCAGSHAQIMNPGDILIGATDGFNETHNQYQEMFGYQRLCQLLTQHHELSATALCNLFFQQVEAFGN SCVQEDDRTMIILKTNP
Sequences:
>Translated_497_residues MHMNMLLQNIPAFETIATAWLKTGIQAFGLWVDSRYQQVWPPSNTITTVAFRAPLVVNGQAIGELHIASDRQNCSQERLD ADAGLLAALLQYEHNVHLLTDELIDCQDQLVTLYDIWTSMGQHGDLTALMQSLMREVVRLTKTSNAWISFASGLGVQHII THGFVPISEQMLRSIQTNQFALFTKHDPICQHLDIVNLLWMPITIRSVIIAGGLGICNKTGEFSATDIKFVQAICEHISL QLEQQMLYQESLAKAQMESELALAQRVQQRLLSTPLPSVADIQLTAHAKPARIIGGDFYDVLQRPDGSVAIMVGDVVGKG VAAALLMMLSRTALRNAALATHDPAAILERTNMDLYDDLTTVGVFITVFVAIYHPKTHMLWYANAGHAPVLIFRNQQTQL LEADCPPIGVLPQLCAGSHAQIMNPGDILIGATDGFNETHNQYQEMFGYQRLCQLLTQHHELSATALCNLFFQQVEAFGN SCVQEDDRTMIILKTNP >Mature_497_residues MHMNMLLQNIPAFETIATAWLKTGIQAFGLWVDSRYQQVWPPSNTITTVAFRAPLVVNGQAIGELHIASDRQNCSQERLD ADAGLLAALLQYEHNVHLLTDELIDCQDQLVTLYDIWTSMGQHGDLTALMQSLMREVVRLTKTSNAWISFASGLGVQHII THGFVPISEQMLRSIQTNQFALFTKHDPICQHLDIVNLLWMPITIRSVIIAGGLGICNKTGEFSATDIKFVQAICEHISL QLEQQMLYQESLAKAQMESELALAQRVQQRLLSTPLPSVADIQLTAHAKPARIIGGDFYDVLQRPDGSVAIMVGDVVGKG VAAALLMMLSRTALRNAALATHDPAAILERTNMDLYDDLTTVGVFITVFVAIYHPKTHMLWYANAGHAPVLIFRNQQTQL LEADCPPIGVLPQLCAGSHAQIMNPGDILIGATDGFNETHNQYQEMFGYQRLCQLLTQHHELSATALCNLFFQQVEAFGN SCVQEDDRTMIILKTNP
Specific function: Involved in cross-regulation of inorganic carbon and glucose metabolisms [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003660 - InterPro: IPR001932 - InterPro: IPR010822 [H]
Pfam domain/function: PF00672 HAMP; PF07228 SpoIIE [H]
EC number: NA
Molecular weight: Translated: 55107; Mature: 55107
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHMNMLLQNIPAFETIATAWLKTGIQAFGLWVDSRYQQVWPPSNTITTVAFRAPLVVNGQ CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEEECCEEECCC AIGELHIASDRQNCSQERLDADAGLLAALLQYEHNVHLLTDELIDCQDQLVTLYDIWTSM CCCEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEEHHHHHCHHHHHHHHHHHHHHC GQHGDLTALMQSLMREVVRLTKTSNAWISFASGLGVQHIITHGFVPISEQMLRSIQTNQF CCCCCHHHHHHHHHHHHHHHHCCCCHHEEHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCE ALFTKHDPICQHLDIVNLLWMPITIRSVIIAGGLGICNKTGEFSATDIKFVQAICEHISL EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH QLEQQMLYQESLAKAQMESELALAQRVQQRLLSTPLPSVADIQLTAHAKPARIIGGDFYD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEECCHHHH VLQRPDGSVAIMVGDVVGKGVAAALLMMLSRTALRNAALATHDPAAILERTNMDLYDDLT HHHCCCCCEEEEECCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHH TVGVFITVFVAIYHPKTHMLWYANAGHAPVLIFRNQQTQLLEADCPPIGVLPQLCAGSHA HHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCHHHCCCCCCCCCCHHHHCCCCC QIMNPGDILIGATDGFNETHNQYQEMFGYQRLCQLLTQHHELSATALCNLFFQQVEAFGN EECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SCVQEDDRTMIILKTNP HHCCCCCCEEEEEECCC >Mature Secondary Structure MHMNMLLQNIPAFETIATAWLKTGIQAFGLWVDSRYQQVWPPSNTITTVAFRAPLVVNGQ CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEEECCEEECCC AIGELHIASDRQNCSQERLDADAGLLAALLQYEHNVHLLTDELIDCQDQLVTLYDIWTSM CCCEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEEHHHHHCHHHHHHHHHHHHHHC GQHGDLTALMQSLMREVVRLTKTSNAWISFASGLGVQHIITHGFVPISEQMLRSIQTNQF CCCCCHHHHHHHHHHHHHHHHCCCCHHEEHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCE ALFTKHDPICQHLDIVNLLWMPITIRSVIIAGGLGICNKTGEFSATDIKFVQAICEHISL EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH QLEQQMLYQESLAKAQMESELALAQRVQQRLLSTPLPSVADIQLTAHAKPARIIGGDFYD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEECCHHHH VLQRPDGSVAIMVGDVVGKGVAAALLMMLSRTALRNAALATHDPAAILERTNMDLYDDLT HHHCCCCCEEEEECCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHH TVGVFITVFVAIYHPKTHMLWYANAGHAPVLIFRNQQTQLLEADCPPIGVLPQLCAGSHA HHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCHHHCCCCCCCCCCHHHHCCCCC QIMNPGDILIGATDGFNETHNQYQEMFGYQRLCQLLTQHHELSATALCNLFFQQVEAFGN EECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SCVQEDDRTMIILKTNP HHCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8075401; 8905231 [H]