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The map label for this gene is xerC [C]

Identifier: 159898571

GI number: 159898571

Start: 2558881

End: 2559126

Strand: Reverse

Name: xerC [C]

Synonym: Haur_2047

Alternate gene names: 159898571

Gene position: 2559126-2558881 (Counterclockwise)

Preceding gene: 159898572

Following gene: 159898570

Centisome position: 40.32

GC content: 59.35

Gene sequence:

>246_bases
ATGAACCGCACTGGTCTCTGCCGCGCCTTTGGGCTGTCGGTTGCCACCTGTGGAATTCAGCAACACGCCACCGTCCATAC
CTTACGCCATTCGTGGGCCACCCACCTCCTCGAAGCGGGTGTCAATCTGCGCATTATTCAGCTCTGGTTGGGCCATCGTT
CACCCGTGACGACCGCCTTGTACACGCACGTTAGCCAGCACGCGGAAGCGATTGCCTGCACTACCAGCCAGCGCTTGTTT
GAGTAG

Upstream 100 bases:

>100_bases
GGTGCTTCGCGTGCATTGGCGAACTCATCGGCATCCGATCTGACTGTTTCCCGCACGCTGGCCCCGCCAAGCCGATCCCT
CGCCAACAGCAGATCACCCC

Downstream 100 bases:

>100_bases
CTCGTATGATCACGCTCAACGCCATTGTCCAGCGCTATGGTCCGGCCTATTGGGCCACCCCGCCAGCGCCGATCAGTCCT
GACCAACGCCGGGTGCTCCA

Product: site-specific recombinase XerD-like protein

Products: NA

Alternate protein names: Integron Integrase; Phage Integrase Family Protein; Phage Integrase; Integrase; Site-Specific Recombinase Phage Integrase Family Protein; Tyrosine Recombinase XerD; Tyrosine Recombinase XerD Subunit; Site-Specific Recombinase XerD-Like Protein

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MNRTGLCRAFGLSVATCGIQQHATVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTALYTHVSQHAEAIACTTSQRLF
E

Sequences:

>Translated_81_residues
MNRTGLCRAFGLSVATCGIQQHATVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTALYTHVSQHAEAIACTTSQRLF
E
>Mature_81_residues
MNRTGLCRAFGLSVATCGIQQHATVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTALYTHVSQHAEAIACTTSQRLF
E

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8990; Mature: 8990

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTGLCRAFGLSVATCGIQQHATVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTAL
CCCCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHH
YTHVSQHAEAIACTTSQRLFE
HHHHHHHHHHHHHCCHHHHCC
>Mature Secondary Structure
MNRTGLCRAFGLSVATCGIQQHATVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTAL
CCCCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHH
YTHVSQHAEAIACTTSQRLFE
HHHHHHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA