Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 159898572

GI number: 159898572

Start: 2559184

End: 2559747

Strand: Reverse

Name: xerD [C]

Synonym: Haur_2048

Alternate gene names: 159898572

Gene position: 2559747-2559184 (Counterclockwise)

Preceding gene: 159898574

Following gene: 159898571

Centisome position: 40.33

GC content: 55.14

Gene sequence:

>564_bases
ATGACAACTGCACTTCGCCGCCGGATGACCGAAGATATGCAGTTGCGCGGCTTATCCCGCGCCACCCAACAATCCTACTT
GTACACCATCGGCTTGATTGCACGCTCCTTTGGTCGTTCGCCGGATCAGCTCACCGATACCGATCTCCGACACTATTTCT
TGTATTTACGCCACGAGCAACACCGCTCACGCAGTACCATTATTCGGACGCTGTGTGCGCTCAAATTCCTCTATGAACAG
ACGCTTCAGCGTACCCTTCCCAGCTTGGAGTTAATCCGTGCCCCCAAAGAACACAAGCTCCCTGTTGTGCTCTGCCCTGA
GGATATTCGGCGCATCTTGGTCCAGATCAAGGTTGACCAATATCGGGTCTGTTTGGCCATCATCTATGCCTGTGGCTTGC
GGCTCCAAGAAGGACTCCAGCTCCGCGTGTCCCAGATCGATAGCGCCCGCATGGTGCTCCATATTCGGGCGGGAAAAGGC
AACAAAGATCGTGATGTTCCCTTGCCCGCATCCGCTCTCCAGGTGCTTCGCGTGCATTGGCGAACTCATCGGCATCCGAT
CTGA

Upstream 100 bases:

>100_bases
CTCCGCGCAGGGTGTGCCCCAGCATTCCACGATGGTCCATCATTGGTATTGGTGGCACACTTCCTCCTGTAGGGTAGGAA
CAACCAACAGGAGGTGCTCC

Downstream 100 bases:

>100_bases
CTGTTTCCCGCACGCTGGCCCCGCCAAGCCGATCCCTCGCCAACAGCAGATCACCCCATGAACCGCACTGGTCTCTGCCG
CGCCTTTGGGCTGTCGGTTG

Product: integrase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTTALRRRMTEDMQLRGLSRATQQSYLYTIGLIARSFGRSPDQLTDTDLRHYFLYLRHEQHRSRSTIIRTLCALKFLYEQ
TLQRTLPSLELIRAPKEHKLPVVLCPEDIRRILVQIKVDQYRVCLAIIYACGLRLQEGLQLRVSQIDSARMVLHIRAGKG
NKDRDVPLPASALQVLRVHWRTHRHPI

Sequences:

>Translated_187_residues
MTTALRRRMTEDMQLRGLSRATQQSYLYTIGLIARSFGRSPDQLTDTDLRHYFLYLRHEQHRSRSTIIRTLCALKFLYEQ
TLQRTLPSLELIRAPKEHKLPVVLCPEDIRRILVQIKVDQYRVCLAIIYACGLRLQEGLQLRVSQIDSARMVLHIRAGKG
NKDRDVPLPASALQVLRVHWRTHRHPI
>Mature_186_residues
TTALRRRMTEDMQLRGLSRATQQSYLYTIGLIARSFGRSPDQLTDTDLRHYFLYLRHEQHRSRSTIIRTLCALKFLYEQT
LQRTLPSLELIRAPKEHKLPVVLCPEDIRRILVQIKVDQYRVCLAIIYACGLRLQEGLQLRVSQIDSARMVLHIRAGKGN
KDRDVPLPASALQVLRVHWRTHRHPI

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21889; Mature: 21758

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTALRRRMTEDMQLRGLSRATQQSYLYTIGLIARSFGRSPDQLTDTDLRHYFLYLRHEQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
HRSRSTIIRTLCALKFLYEQTLQRTLPSLELIRAPKEHKLPVVLCPEDIRRILVQIKVDQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHCCCEEECCHHHHHHHHHHHHHH
YRVCLAIIYACGLRLQEGLQLRVSQIDSARMVLHIRAGKGNKDRDVPLPASALQVLRVHW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
RTHRHPI
HHCCCCC
>Mature Secondary Structure 
TTALRRRMTEDMQLRGLSRATQQSYLYTIGLIARSFGRSPDQLTDTDLRHYFLYLRHEQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
HRSRSTIIRTLCALKFLYEQTLQRTLPSLELIRAPKEHKLPVVLCPEDIRRILVQIKVDQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHCCCEEECCHHHHHHHHHHHHHH
YRVCLAIIYACGLRLQEGLQLRVSQIDSARMVLHIRAGKGNKDRDVPLPASALQVLRVHW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
RTHRHPI
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]