| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898565
Identifier: 159898565
GI number: 159898565
Start: 2546670
End: 2547830
Strand: Reverse
Name: 159898565
Synonym: Haur_2041
Alternate gene names: NA
Gene position: 2547830-2546670 (Counterclockwise)
Preceding gene: 159898566
Following gene: 159898564
Centisome position: 40.14
GC content: 58.66
Gene sequence:
>1161_bases ATGGCGACCAATCAATCATTGACCGAGCGGTTTCAGCGGGGATTGCAAACCACCTACCATGCGGCGGTCATGGTCGGAGG CAGTTTGACTGTTGGATCGTTGCTCGCTGGAGGTCTTGCCCCGCTCTTGATGGGTGGCGTGAGTCTGACAGTGCTTGCCC CATGGTTAAAGAGTATGGGTGGCAATGCCCTTGCAGGTTGGTTGGGGCAGTGGGCGATGCAGGCCATGCGTCCTGATCAA ACCGAAGCGCGGCTGCGGGCGGCGATGGCCGACTCCTTGTCAACCCAGATGCAAAGCAATGCGGATTTAGTGCAGGATCT CGCAGTGCTCATACAGCACGCCCGCCACGATCAGGCAGTATCGGCCATCCTGATGGACTATGCAGACCTGACCGCCGAGA CGACGCTGCGTATTGAGACGCGCGTCACCCACGCGGCAATGGTCTTACAAACCCTCTATACCGACATCCAGCAGTTGCGC CATGAAACGCAGACCCTCGGCGAGCAACTACTTATGCAGGTATCTGCAACCCAGGTGGCGTTAGTGCAGTATGCGCAGCA GCATGATCTGATGCACAACCACCGGATTCAGCAGCTGCTTGTGGCCCTTCACGAAGCCGACCAGGCCAGCAGGATGCGTG CTGCGGGAGCCGCCAGTGTCGCGCGTCGCAATCAGGCCAAAGCGCTCATTCAGTCTGGATCGGGGACTGCCCAGCCAGCC AACTATGCCGAGGGGAATAGTGTAGGTGGCGTAATTCGTCAAACCTATTATGGGCCACCATCCGCATCAGGAACACCACC CCGCACCCATCCGAATGTGGCCGAGGACAATACGATTGGGGAGGATATGACCCAAACATGGGATGATCGCGGGCCAACCG TTGCGCCGACACCCCACGCCACGGTGGTGGTGGACAGCCCATGGTATTGCGATGAATCCTGTTTTGTGACGATCACGATG CAGCATGCGACGGGACCATATCAGGTGCGCTGGTATTGGGGCGCGACCAGCGGATTACTGCGCAGCACCATCGACACCCT GAGTCTGACAATTACGCCCACGACCCTTGGGCAAACGCGCCTCCGCATCCAGATTGATGATCAGGAGGGACAGCGCATCG CCGAGCATCAGCAGGTCGTGACCGTATTTGAGCGTTCCTAA
Upstream 100 bases:
>100_bases GTATTCCAACAAGTATGACAGGGAACCATCAGCGAAATGGCGGGATACCTTCAGCGAAATGGCGGGATACCTTGCGTGAT GATCAAGAAAGGATAGGCCG
Downstream 100 bases:
>100_bases TTTCTGGTAGGCAAAGGATGACTCTATGACGAACGCCCTTCCGGACGCTGTTTTGGCCAAACTCCATGCCGTGTTTCCCG ACCTTGCCGCTGCCGACCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MATNQSLTERFQRGLQTTYHAAVMVGGSLTVGSLLAGGLAPLLMGGVSLTVLAPWLKSMGGNALAGWLGQWAMQAMRPDQ TEARLRAAMADSLSTQMQSNADLVQDLAVLIQHARHDQAVSAILMDYADLTAETTLRIETRVTHAAMVLQTLYTDIQQLR HETQTLGEQLLMQVSATQVALVQYAQQHDLMHNHRIQQLLVALHEADQASRMRAAGAASVARRNQAKALIQSGSGTAQPA NYAEGNSVGGVIRQTYYGPPSASGTPPRTHPNVAEDNTIGEDMTQTWDDRGPTVAPTPHATVVVDSPWYCDESCFVTITM QHATGPYQVRWYWGATSGLLRSTIDTLSLTITPTTLGQTRLRIQIDDQEGQRIAEHQQVVTVFERS
Sequences:
>Translated_386_residues MATNQSLTERFQRGLQTTYHAAVMVGGSLTVGSLLAGGLAPLLMGGVSLTVLAPWLKSMGGNALAGWLGQWAMQAMRPDQ TEARLRAAMADSLSTQMQSNADLVQDLAVLIQHARHDQAVSAILMDYADLTAETTLRIETRVTHAAMVLQTLYTDIQQLR HETQTLGEQLLMQVSATQVALVQYAQQHDLMHNHRIQQLLVALHEADQASRMRAAGAASVARRNQAKALIQSGSGTAQPA NYAEGNSVGGVIRQTYYGPPSASGTPPRTHPNVAEDNTIGEDMTQTWDDRGPTVAPTPHATVVVDSPWYCDESCFVTITM QHATGPYQVRWYWGATSGLLRSTIDTLSLTITPTTLGQTRLRIQIDDQEGQRIAEHQQVVTVFERS >Mature_385_residues ATNQSLTERFQRGLQTTYHAAVMVGGSLTVGSLLAGGLAPLLMGGVSLTVLAPWLKSMGGNALAGWLGQWAMQAMRPDQT EARLRAAMADSLSTQMQSNADLVQDLAVLIQHARHDQAVSAILMDYADLTAETTLRIETRVTHAAMVLQTLYTDIQQLRH ETQTLGEQLLMQVSATQVALVQYAQQHDLMHNHRIQQLLVALHEADQASRMRAAGAASVARRNQAKALIQSGSGTAQPAN YAEGNSVGGVIRQTYYGPPSASGTPPRTHPNVAEDNTIGEDMTQTWDDRGPTVAPTPHATVVVDSPWYCDESCFVTITMQ HATGPYQVRWYWGATSGLLRSTIDTLSLTITPTTLGQTRLRIQIDDQEGQRIAEHQQVVTVFERS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42008; Mature: 41877
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATNQSLTERFQRGLQTTYHAAVMVGGSLTVGSLLAGGLAPLLMGGVSLTVLAPWLKSMG CCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC GNALAGWLGQWAMQAMRPDQTEARLRAAMADSLSTQMQSNADLVQDLAVLIQHARHDQAV CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH SAILMDYADLTAETTLRIETRVTHAAMVLQTLYTDIQQLRHETQTLGEQLLMQVSATQVA HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVQYAQQHDLMHNHRIQQLLVALHEADQASRMRAAGAASVARRNQAKALIQSGSGTAQPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC NYAEGNSVGGVIRQTYYGPPSASGTPPRTHPNVAEDNTIGEDMTQTWDDRGPTVAPTPHA CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCE TVVVDSPWYCDESCFVTITMQHATGPYQVRWYWGATSGLLRSTIDTLSLTITPTTLGQTR EEEECCCCEECCCEEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHEEEEEEECCCCCEE LRIQIDDQEGQRIAEHQQVVTVFERS EEEEECCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure ATNQSLTERFQRGLQTTYHAAVMVGGSLTVGSLLAGGLAPLLMGGVSLTVLAPWLKSMG CCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC GNALAGWLGQWAMQAMRPDQTEARLRAAMADSLSTQMQSNADLVQDLAVLIQHARHDQAV CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH SAILMDYADLTAETTLRIETRVTHAAMVLQTLYTDIQQLRHETQTLGEQLLMQVSATQVA HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVQYAQQHDLMHNHRIQQLLVALHEADQASRMRAAGAASVARRNQAKALIQSGSGTAQPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC NYAEGNSVGGVIRQTYYGPPSASGTPPRTHPNVAEDNTIGEDMTQTWDDRGPTVAPTPHA CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCE TVVVDSPWYCDESCFVTITMQHATGPYQVRWYWGATSGLLRSTIDTLSLTITPTTLGQTR EEEECCCCEECCCEEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHEEEEEEECCCCCEE LRIQIDDQEGQRIAEHQQVVTVFERS EEEEECCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA