| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is yfeW [C]
Identifier: 159898473
GI number: 159898473
Start: 2362045
End: 2363505
Strand: Direct
Name: yfeW [C]
Synonym: Haur_1949
Alternate gene names: 159898473
Gene position: 2362045-2363505 (Clockwise)
Preceding gene: 159898472
Following gene: 159898477
Centisome position: 37.22
GC content: 49.69
Gene sequence:
>1461_bases ATGTTTCCAATTAGCGACTATAAGCTTCCGCGAGCCACGCCCGAAGCACAAGGCATTGCATCGGCGGCGTTGCTTCAATT TATCGAGGCCATGGATACCCACGTTAATCAAATCCATAGTTTGATGCTGCTGCGTCATGGTCATGTGGTTGCTGAAGCTT GGTGGTCGCCGTATGCGCCTGCCTATCCGCAGCTTTTATTTTCGCTGAGCAAAAGTTTTACCGCAACGGCGGTTGGGCTA GCGATCGCCGAAGGCTACTTTGCTATCGATGATCCGGTTATATCCTTCTTTCCTGAGCACACTCCTGCGGAATGTAGCCC TATGCTTGCAGCGATGCGCGTTCGCGATTTGTTATCGATGGCAACTGGCCACGCTGATGATCCATGGGTATCGATGATTT CACGTCAGGATGGCAACTGGATTAAGGGCTTTCTTGAAACTCCAGTTGTTTATGCCCCAGGCACCCATTTTGTGTACAAT ACAAGCGCCACCTATATGCTGTCGGCAATTGTGCAGCAAACAACGACAATTCGGCTCGATGAATATTTGAAACCACGGCT ATTTGAACCATTGGGAATTGAGCATGTTGATTGGCACATATCGCCGCAAGGAATAACGCTGGGGGGAATTGGGCTAAGCC TGACCACCGAAGCAGTTGCCCGCTTTGGTCAGCTTTATTTGCAAAAAGGTTGCTGGAATGGGATTCAGCTTTTGCCAGAG GCATGGGTTGGGCAAGCTAGCGCCATGCAAATAATCAACGGCGCTGATCCACATTCTGATTGGGCGCAGGGCTATGGCTA TCAATTTTGGCGCTGCCGTCATGGAGCCTATCGTGGCGATGGGGTGTTTGGGCAATATTGTATTGTTATGCCCGAGCAGG ATGCGGTGCTTGTGATCACGGGAGGGGTGGATGTCTTTGCGATGCAGCAACCATTGAATCTGGTTTGGGAATATTTGCTG CCCGCGATGCAAGCCGAGCGCTTGATAGACGATACGCTAGCGCAACGGCAACTAACAGAAAAACTTGCCAACTTACAGGT TCCAACTATCCACGGCGAATCCAGCGCGGCAATTGCCCAACATGTCTCTGGCCGAAGCTATCAGGTTGATTCGAATAGCT TCATGATTGAACGTATCAGCTTTGATTTTAGCGCAACTGGCTGTTCGGTTGTTGTCCAAACAGCGACGGCAACTGAAACA ATTGTTTGTGGGTATCGCACATGGTCATTGGGTCGCAGCAGCCTCTTTGCGCAACACTTTTTTGATGACACCCCAGTGAT GGCTTACGGTGCTTGGACTGCCCCAGATCGGTTTACCATGGTTGTGCGGCTCTATCAAACTCCATTTGTTTACACGATGG AATATCATTTTGTAGACGCTGAATTGCTAATGACGATTCAAATCAATGTCTCGTTTGATTCGTTAGCTCCGCTTGTGCTG ACTGCGCGGCAGGTAACTTAA
Upstream 100 bases:
>100_bases GAATAACCTGCATTATCAGTTACTTGGAGCGGCAGTCTTTACAAAGACTGCCGCTTTTGTGTATGCTCAAATTAATTAAC CTGCAATAGGAGCATAATCA
Downstream 100 bases:
>100_bases GCTGATGTGGATTTAGCGCCAGCGTTGTAATGCGCCATGAAAACAAATATGCATTAGGTACTCCTTTAATTACAAGGCTT GAAAGTAGCGGGCAATTGGC
Product: beta-lactamase
Products: NA
Alternate protein names: 6-Aminohexanoate-Dimer Hydrolase; Beta-Lactamase Family Protein; Beta-Lactamase Class C; 6-Aminohexanoate-Dimer Hydrolase Protein; Hydrolase; Secreted Beta-Lactamase Family Protein; Hydrolase Transmembrane Protein; Membrane Or Secreted Beta-Lactamase Family Protein; Exported 6-Aminohexanoate-Dimer Hydrolase Protein; Beta-Lactamase Class C-Like Protein; Beta-Lactamase Class C Family Protein; Beta-Lactamase Class C Protein; Beta-Lactamase-Like Hydrolase
Number of amino acids: Translated: 486; Mature: 486
Protein sequence:
>486_residues MFPISDYKLPRATPEAQGIASAALLQFIEAMDTHVNQIHSLMLLRHGHVVAEAWWSPYAPAYPQLLFSLSKSFTATAVGL AIAEGYFAIDDPVISFFPEHTPAECSPMLAAMRVRDLLSMATGHADDPWVSMISRQDGNWIKGFLETPVVYAPGTHFVYN TSATYMLSAIVQQTTTIRLDEYLKPRLFEPLGIEHVDWHISPQGITLGGIGLSLTTEAVARFGQLYLQKGCWNGIQLLPE AWVGQASAMQIINGADPHSDWAQGYGYQFWRCRHGAYRGDGVFGQYCIVMPEQDAVLVITGGVDVFAMQQPLNLVWEYLL PAMQAERLIDDTLAQRQLTEKLANLQVPTIHGESSAAIAQHVSGRSYQVDSNSFMIERISFDFSATGCSVVVQTATATET IVCGYRTWSLGRSSLFAQHFFDDTPVMAYGAWTAPDRFTMVVRLYQTPFVYTMEYHFVDAELLMTIQINVSFDSLAPLVL TARQVT
Sequences:
>Translated_486_residues MFPISDYKLPRATPEAQGIASAALLQFIEAMDTHVNQIHSLMLLRHGHVVAEAWWSPYAPAYPQLLFSLSKSFTATAVGL AIAEGYFAIDDPVISFFPEHTPAECSPMLAAMRVRDLLSMATGHADDPWVSMISRQDGNWIKGFLETPVVYAPGTHFVYN TSATYMLSAIVQQTTTIRLDEYLKPRLFEPLGIEHVDWHISPQGITLGGIGLSLTTEAVARFGQLYLQKGCWNGIQLLPE AWVGQASAMQIINGADPHSDWAQGYGYQFWRCRHGAYRGDGVFGQYCIVMPEQDAVLVITGGVDVFAMQQPLNLVWEYLL PAMQAERLIDDTLAQRQLTEKLANLQVPTIHGESSAAIAQHVSGRSYQVDSNSFMIERISFDFSATGCSVVVQTATATET IVCGYRTWSLGRSSLFAQHFFDDTPVMAYGAWTAPDRFTMVVRLYQTPFVYTMEYHFVDAELLMTIQINVSFDSLAPLVL TARQVT >Mature_486_residues MFPISDYKLPRATPEAQGIASAALLQFIEAMDTHVNQIHSLMLLRHGHVVAEAWWSPYAPAYPQLLFSLSKSFTATAVGL AIAEGYFAIDDPVISFFPEHTPAECSPMLAAMRVRDLLSMATGHADDPWVSMISRQDGNWIKGFLETPVVYAPGTHFVYN TSATYMLSAIVQQTTTIRLDEYLKPRLFEPLGIEHVDWHISPQGITLGGIGLSLTTEAVARFGQLYLQKGCWNGIQLLPE AWVGQASAMQIINGADPHSDWAQGYGYQFWRCRHGAYRGDGVFGQYCIVMPEQDAVLVITGGVDVFAMQQPLNLVWEYLL PAMQAERLIDDTLAQRQLTEKLANLQVPTIHGESSAAIAQHVSGRSYQVDSNSFMIERISFDFSATGCSVVVQTATATET IVCGYRTWSLGRSSLFAQHFFDDTPVMAYGAWTAPDRFTMVVRLYQTPFVYTMEYHFVDAELLMTIQINVSFDSLAPLVL TARQVT
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54037; Mature: 54037
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPISDYKLPRATPEAQGIASAALLQFIEAMDTHVNQIHSLMLLRHGHVVAEAWWSPYAP CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC AYPQLLFSLSKSFTATAVGLAIAEGYFAIDDPVISFFPEHTPAECSPMLAAMRVRDLLSM HHHHHHHHHHCCHHHHHHHHHHHCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH ATGHADDPWVSMISRQDGNWIKGFLETPVVYAPGTHFVYNTSATYMLSAIVQQTTTIRLD HCCCCCCHHHHHHHCCCCCHHHHHHCCCEEEECCCCEEECCCHHHHHHHHHHHHHEEEHH EYLKPRLFEPLGIEHVDWHISPQGITLGGIGLSLTTEAVARFGQLYLQKGCWNGIQLLPE HHCCCCCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH AWVGQASAMQIINGADPHSDWAQGYGYQFWRCRHGAYRGDGVFGQYCIVMPEQDAVLVIT HHCCCHHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEE GGVDVFAMQQPLNLVWEYLLPAMQAERLIDDTLAQRQLTEKLANLQVPTIHGESSAAIAQ CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHH HVSGRSYQVDSNSFMIERISFDFSATGCSVVVQTATATETIVCGYRTWSLGRSSLFAQHF HCCCCEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHHHHH FDDTPVMAYGAWTAPDRFTMVVRLYQTPFVYTMEYHFVDAELLMTIQINVSFDSLAPLVL CCCCCEEEEECCCCCCHHEEEEEEECCCEEEEEEEEEECEEEEEEEEEEECHHHHCHHHH TARQVT EEECCC >Mature Secondary Structure MFPISDYKLPRATPEAQGIASAALLQFIEAMDTHVNQIHSLMLLRHGHVVAEAWWSPYAP CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC AYPQLLFSLSKSFTATAVGLAIAEGYFAIDDPVISFFPEHTPAECSPMLAAMRVRDLLSM HHHHHHHHHHCCHHHHHHHHHHHCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH ATGHADDPWVSMISRQDGNWIKGFLETPVVYAPGTHFVYNTSATYMLSAIVQQTTTIRLD HCCCCCCHHHHHHHCCCCCHHHHHHCCCEEEECCCCEEECCCHHHHHHHHHHHHHEEEHH EYLKPRLFEPLGIEHVDWHISPQGITLGGIGLSLTTEAVARFGQLYLQKGCWNGIQLLPE HHCCCCCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH AWVGQASAMQIINGADPHSDWAQGYGYQFWRCRHGAYRGDGVFGQYCIVMPEQDAVLVIT HHCCCHHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEE GGVDVFAMQQPLNLVWEYLLPAMQAERLIDDTLAQRQLTEKLANLQVPTIHGESSAAIAQ CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHH HVSGRSYQVDSNSFMIERISFDFSATGCSVVVQTATATETIVCGYRTWSLGRSSLFAQHF HCCCCEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHHHHH FDDTPVMAYGAWTAPDRFTMVVRLYQTPFVYTMEYHFVDAELLMTIQINVSFDSLAPLVL CCCCCEEEEECCCCCCHHEEEEEEECCCEEEEEEEEEECEEEEEEEEEEECHHHHCHHHH TARQVT EEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA