| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159898467
Identifier: 159898467
GI number: 159898467
Start: 2355621
End: 2358266
Strand: Reverse
Name: 159898467
Synonym: Haur_1943
Alternate gene names: NA
Gene position: 2358266-2355621 (Counterclockwise)
Preceding gene: 159898469
Following gene: 159898466
Centisome position: 37.16
GC content: 49.77
Gene sequence:
>2646_bases ATGGCGCATGTACTTAACCCAATCTTACGCACAGTACTCAATCAATTTGATCAGCCAGCCCAACTTGGCAACATTCAACC TTTGGCAACGCCAGCCTTCCTTGGGCAATGGTACGATCTGTTTGGGGCACATCCGAGCGAACGCCAACGTGGCCAGATTA TTCAGCTTGTCGTGGTTTATGCCTTGTTGGGTGATACCCATATTCGCCCCGAAGAATCACATGATTTAGCTGAACTATTA GAACAACTTCGCGCTGGCAACCGCGATCAGCGCTTGATTTATTGGCGCTTTTTGCATGAACATAAACTACCAGTCAATGT ACTTATTGACCAACTTGGTTTAGCCAAGGCTACCTTTCATCGCGACATGAAAGATCGTTTGCCCTTGATTTTGGATCAAG CTACTGATTGTTTATTAAGCATTTTACAACCTGCGCTGCAACTAGAGCGCCCACCAGTGCCGAGCCATCTGTATGGTCGC AGCCAATGGTTGGCTGAAGCACAGGCACTGCTCAAACAGCAACGCCAGCTTTGTATTATTGGCGCACCTGGCGTGGGCAA AAGTGCGAGCGCCGCAACCCTCGCTGCTGCTTGGCAAGGCCCAGTCTTTTGGCTCAGCTTACTCCCCGATTTGAATGATC AGATCGAAAGTTGTTTGCCCTTGATTGGGGCATTTCTCCAGCACCATGGAGCCTACAACTTGGCCCAACATTTGGCAATC GAAGGCGGTAAGTTGAATAGCAACGTGGCGTTAGGCCTGATTCGGCGCGATTGTGCTAGCCTGCCAGCAGCTCCCTTATT TTGCCTTGATCAAGGCGAGGTTATGCTAAGTCAGCCCCAGCATAGCGCCTTGCACTCATTTTGGCGAGCCTTAGCGGCAA TTCCCAATCTGCATCTGCTGATTGTTGGCAATCAGGTTTTCAGCAATGATCTGCCAACGCTCACCTTGGAGCCATTGGAT AGTGCCGCACTAAAAGCTTGGTTCAATGCTAGCACAGCCATTCAGCCCGATTACCCATGGGAGCAATTTCTTGCACTGAT TGCTGGCAATGCTCATCTCATGCGGATCGTGATGGTCTTAATGCAGCAAGAGCCGAGTTTGGCAGCGATTTGCGCGATGC TAGCGGCCCATCCAAGCGTTGGCTATTTAATTGAGCGGATTATCAGCATGCTCAGCCCAAACGCCCAACAACTACTAACG GTGTTGGCCAGTTTTCAGCAACCGGTTCCACGCAGTTTATGGCCAACCAAAGATCTGCAACAGCTTGAGCATTTTGAATT GCTGCAAACTGGCTATCATGATACGCTTGAGCTTTGGCCGTTGCTACGCAAACACTTTTGGCAACAATTGAGCGCCGAGC AACGCCAGCCATTGAATGAACACGCCGCCCAAGTGCATGCAATGCTCGGCCAATGGACGCTGGCGGCCGAACATGCAATC GCCGCCGGGGCGTATAGCCAAGCGATTATGTGGTGGTTTCCCCAACGGCATAATGAAATTCGCGCCGGCTACTTTGGCCG TATGCTGCGTATGCTGCAATTAATCCCACTTGATCAAATACCAGCCCGCGAGGCCCAAACCTTAGCGATTGGCCAAGCCG AGCTGGCCCGATTTACTGGAAACTACGAGCAGGCGCGGGCTAGTTTAGCGGCGGTATCTTACACCGGCAGCGATTCAATT CGGGCCTATATTCGCCAATTAGAAGGCGATTTATGGGAAGCCCAAGGCTATATCGAGCAAGCTATGAGCAGTTACGAGCG AGCAATCACAATTTTGGATACGAACCAGCAACATCAAGAAGCAATTTTGCATGTCAAACGTGGCTTGATGCACCTGAACC ATGAGCGTGATTTTGCAGCCGCGCACCTAGCTGCTACTAAAACCCACTTTATTGCGGCATTACTCAGTGCTGAAGTTGCC GATGAAGAGGGCAATTATGACTTGGCATTGCAAGGCTACCAAACTGCGCTCGATCATGCCTGCACGCTCAACGATCAAGC CTTACAAGCACGTGCTCATGCGAGTTTAGCGATTGTCCATGCGCGTCATGAACATTCTGAGGCAATTGAACATTTTGATT TTGCGATTCGCTACTACCGTTCGATTGGCAACGATGTGCGAGTTGCTCGCAATCAAAGCAACTTGGCCTACTTTTTGGTG GAAATCAACCAACCACACGAGGCGATTAAGCTCGCCGAGCAAGCCTATAGTTTTTTCAAACAGATTAATTCACGTTTTTG GGTTTCGCTAAACGCCATGACTCTAGCCGATGCTCACTTAAGCCTTGATCAATACCCAACTGCCGAGCAATATGCCCAAG AAGTGCTTCACTACGAAGAAACAGGCCATGTTCCCTTTGGGGTCTATATCTTAGGTCGGGTCGCAACCCTAAAACACGAA TTTGAACTGGCCGAGCGCTATCTGCAACAAGCGATCCAACTAAGCCAAGCCATCCAAGATCGGTTTATCGAAGCGCGGGT ATGGCGCGATCTCACCAAGCTCTTACATCAAACTCAACGTCATGGCGAAGCGAAACAGGCCATCAAACAAGCCTGCGATT TATACCAGCAATTGGGCTTGAGCAAAGAGCTTGATCGAACGCTACAATTAGCTCAAGGCTACAATTTGCAATTAATTGCA GGCTAA
Upstream 100 bases:
>100_bases GGGCTTGTGGCTCAAAAAAGTCTCAGATTGCACCCAAAAAGTCTCACTTAGGCCAAAACGAGCCAACTAGCGGCTGCTTT AGGTTATCGAGGAGTGTGGA
Downstream 100 bases:
>100_bases CCCTACGCCCGCTTGACAGCGAAGCAGGCCAACCTGATAATCCTAGCCGAGAAGCATGCTAGATAAATTATGCAATTTGT TATTCAACAATCGAAACTAA
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 881; Mature: 880
Protein sequence:
>881_residues MAHVLNPILRTVLNQFDQPAQLGNIQPLATPAFLGQWYDLFGAHPSERQRGQIIQLVVVYALLGDTHIRPEESHDLAELL EQLRAGNRDQRLIYWRFLHEHKLPVNVLIDQLGLAKATFHRDMKDRLPLILDQATDCLLSILQPALQLERPPVPSHLYGR SQWLAEAQALLKQQRQLCIIGAPGVGKSASAATLAAAWQGPVFWLSLLPDLNDQIESCLPLIGAFLQHHGAYNLAQHLAI EGGKLNSNVALGLIRRDCASLPAAPLFCLDQGEVMLSQPQHSALHSFWRALAAIPNLHLLIVGNQVFSNDLPTLTLEPLD SAALKAWFNASTAIQPDYPWEQFLALIAGNAHLMRIVMVLMQQEPSLAAICAMLAAHPSVGYLIERIISMLSPNAQQLLT VLASFQQPVPRSLWPTKDLQQLEHFELLQTGYHDTLELWPLLRKHFWQQLSAEQRQPLNEHAAQVHAMLGQWTLAAEHAI AAGAYSQAIMWWFPQRHNEIRAGYFGRMLRMLQLIPLDQIPAREAQTLAIGQAELARFTGNYEQARASLAAVSYTGSDSI RAYIRQLEGDLWEAQGYIEQAMSSYERAITILDTNQQHQEAILHVKRGLMHLNHERDFAAAHLAATKTHFIAALLSAEVA DEEGNYDLALQGYQTALDHACTLNDQALQARAHASLAIVHARHEHSEAIEHFDFAIRYYRSIGNDVRVARNQSNLAYFLV EINQPHEAIKLAEQAYSFFKQINSRFWVSLNAMTLADAHLSLDQYPTAEQYAQEVLHYEETGHVPFGVYILGRVATLKHE FELAERYLQQAIQLSQAIQDRFIEARVWRDLTKLLHQTQRHGEAKQAIKQACDLYQQLGLSKELDRTLQLAQGYNLQLIA G
Sequences:
>Translated_881_residues MAHVLNPILRTVLNQFDQPAQLGNIQPLATPAFLGQWYDLFGAHPSERQRGQIIQLVVVYALLGDTHIRPEESHDLAELL EQLRAGNRDQRLIYWRFLHEHKLPVNVLIDQLGLAKATFHRDMKDRLPLILDQATDCLLSILQPALQLERPPVPSHLYGR SQWLAEAQALLKQQRQLCIIGAPGVGKSASAATLAAAWQGPVFWLSLLPDLNDQIESCLPLIGAFLQHHGAYNLAQHLAI EGGKLNSNVALGLIRRDCASLPAAPLFCLDQGEVMLSQPQHSALHSFWRALAAIPNLHLLIVGNQVFSNDLPTLTLEPLD SAALKAWFNASTAIQPDYPWEQFLALIAGNAHLMRIVMVLMQQEPSLAAICAMLAAHPSVGYLIERIISMLSPNAQQLLT VLASFQQPVPRSLWPTKDLQQLEHFELLQTGYHDTLELWPLLRKHFWQQLSAEQRQPLNEHAAQVHAMLGQWTLAAEHAI AAGAYSQAIMWWFPQRHNEIRAGYFGRMLRMLQLIPLDQIPAREAQTLAIGQAELARFTGNYEQARASLAAVSYTGSDSI RAYIRQLEGDLWEAQGYIEQAMSSYERAITILDTNQQHQEAILHVKRGLMHLNHERDFAAAHLAATKTHFIAALLSAEVA DEEGNYDLALQGYQTALDHACTLNDQALQARAHASLAIVHARHEHSEAIEHFDFAIRYYRSIGNDVRVARNQSNLAYFLV EINQPHEAIKLAEQAYSFFKQINSRFWVSLNAMTLADAHLSLDQYPTAEQYAQEVLHYEETGHVPFGVYILGRVATLKHE FELAERYLQQAIQLSQAIQDRFIEARVWRDLTKLLHQTQRHGEAKQAIKQACDLYQQLGLSKELDRTLQLAQGYNLQLIA G >Mature_880_residues AHVLNPILRTVLNQFDQPAQLGNIQPLATPAFLGQWYDLFGAHPSERQRGQIIQLVVVYALLGDTHIRPEESHDLAELLE QLRAGNRDQRLIYWRFLHEHKLPVNVLIDQLGLAKATFHRDMKDRLPLILDQATDCLLSILQPALQLERPPVPSHLYGRS QWLAEAQALLKQQRQLCIIGAPGVGKSASAATLAAAWQGPVFWLSLLPDLNDQIESCLPLIGAFLQHHGAYNLAQHLAIE GGKLNSNVALGLIRRDCASLPAAPLFCLDQGEVMLSQPQHSALHSFWRALAAIPNLHLLIVGNQVFSNDLPTLTLEPLDS AALKAWFNASTAIQPDYPWEQFLALIAGNAHLMRIVMVLMQQEPSLAAICAMLAAHPSVGYLIERIISMLSPNAQQLLTV LASFQQPVPRSLWPTKDLQQLEHFELLQTGYHDTLELWPLLRKHFWQQLSAEQRQPLNEHAAQVHAMLGQWTLAAEHAIA AGAYSQAIMWWFPQRHNEIRAGYFGRMLRMLQLIPLDQIPAREAQTLAIGQAELARFTGNYEQARASLAAVSYTGSDSIR AYIRQLEGDLWEAQGYIEQAMSSYERAITILDTNQQHQEAILHVKRGLMHLNHERDFAAAHLAATKTHFIAALLSAEVAD EEGNYDLALQGYQTALDHACTLNDQALQARAHASLAIVHARHEHSEAIEHFDFAIRYYRSIGNDVRVARNQSNLAYFLVE INQPHEAIKLAEQAYSFFKQINSRFWVSLNAMTLADAHLSLDQYPTAEQYAQEVLHYEETGHVPFGVYILGRVATLKHEF ELAERYLQQAIQLSQAIQDRFIEARVWRDLTKLLHQTQRHGEAKQAIKQACDLYQQLGLSKELDRTLQLAQGYNLQLIAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99229; Mature: 99098
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHVLNPILRTVLNQFDQPAQLGNIQPLATPAFLGQWYDLFGAHPSERQRGQIIQLVVVY CCHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH ALLGDTHIRPEESHDLAELLEQLRAGNRDQRLIYWRFLHEHKLPVNVLIDQLGLAKATFH HHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHHHH RDMKDRLPLILDQATDCLLSILQPALQLERPPVPSHLYGRSQWLAEAQALLKQQRQLCII HCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEE GAPGVGKSASAATLAAAWQGPVFWLSLLPDLNDQIESCLPLIGAFLQHHGAYNLAQHLAI ECCCCCCCCCHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH EGGKLNSNVALGLIRRDCASLPAAPLFCLDQGEVMLSQPQHSALHSFWRALAAIPNLHLL CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHCCCEEEE IVGNQVFSNDLPTLTLEPLDSAALKAWFNASTAIQPDYPWEQFLALIAGNAHLMRIVMVL EECCHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH MQQEPSLAAICAMLAAHPSVGYLIERIISMLSPNAQQLLTVLASFQQPVPRSLWPTKDLQ HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHH QLEHFELLQTGYHDTLELWPLLRKHFWQQLSAEQRQPLNEHAAQVHAMLGQWTLAAEHAI HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AAGAYSQAIMWWFPQRHNEIRAGYFGRMLRMLQLIPLDQIPAREAQTLAIGQAELARFTG HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHCC NYEQARASLAAVSYTGSDSIRAYIRQLEGDLWEAQGYIEQAMSSYERAITILDTNQQHQE CHHHHHHHHHHEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHH AILHVKRGLMHLNHERDFAAAHLAATKTHFIAALLSAEVADEEGNYDLALQGYQTALDHA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHH CTLNDQALQARAHASLAIVHARHEHSEAIEHFDFAIRYYRSIGNDVRVARNQSNLAYFLV HCCCHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEE EINQPHEAIKLAEQAYSFFKQINSRFWVSLNAMTLADAHLSLDQYPTAEQYAQEVLHYEE EECCCHHHHHHHHHHHHHHHHHCCCEEEEECHHEEHHHHHCCCCCCCHHHHHHHHHHHHH TGHVPFGVYILGRVATLKHEFELAERYLQQAIQLSQAIQDRFIEARVWRDLTKLLHQTQR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HGEAKQAIKQACDLYQQLGLSKELDRTLQLAQGYNLQLIAG CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEC >Mature Secondary Structure AHVLNPILRTVLNQFDQPAQLGNIQPLATPAFLGQWYDLFGAHPSERQRGQIIQLVVVY CHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH ALLGDTHIRPEESHDLAELLEQLRAGNRDQRLIYWRFLHEHKLPVNVLIDQLGLAKATFH HHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHHHH RDMKDRLPLILDQATDCLLSILQPALQLERPPVPSHLYGRSQWLAEAQALLKQQRQLCII HCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEE GAPGVGKSASAATLAAAWQGPVFWLSLLPDLNDQIESCLPLIGAFLQHHGAYNLAQHLAI ECCCCCCCCCHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH EGGKLNSNVALGLIRRDCASLPAAPLFCLDQGEVMLSQPQHSALHSFWRALAAIPNLHLL CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHCCCEEEE IVGNQVFSNDLPTLTLEPLDSAALKAWFNASTAIQPDYPWEQFLALIAGNAHLMRIVMVL EECCHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH MQQEPSLAAICAMLAAHPSVGYLIERIISMLSPNAQQLLTVLASFQQPVPRSLWPTKDLQ HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHH QLEHFELLQTGYHDTLELWPLLRKHFWQQLSAEQRQPLNEHAAQVHAMLGQWTLAAEHAI HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AAGAYSQAIMWWFPQRHNEIRAGYFGRMLRMLQLIPLDQIPAREAQTLAIGQAELARFTG HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHCC NYEQARASLAAVSYTGSDSIRAYIRQLEGDLWEAQGYIEQAMSSYERAITILDTNQQHQE CHHHHHHHHHHEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHH AILHVKRGLMHLNHERDFAAAHLAATKTHFIAALLSAEVADEEGNYDLALQGYQTALDHA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHH CTLNDQALQARAHASLAIVHARHEHSEAIEHFDFAIRYYRSIGNDVRVARNQSNLAYFLV HCCCHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEE EINQPHEAIKLAEQAYSFFKQINSRFWVSLNAMTLADAHLSLDQYPTAEQYAQEVLHYEE EECCCHHHHHHHHHHHHHHHHHCCCEEEEECHHEEHHHHHCCCCCCCHHHHHHHHHHHHH TGHVPFGVYILGRVATLKHEFELAERYLQQAIQLSQAIQDRFIEARVWRDLTKLLHQTQR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HGEAKQAIKQACDLYQQLGLSKELDRTLQLAQGYNLQLIAG CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA