| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is ydfG [H]
Identifier: 159898430
GI number: 159898430
Start: 2300878
End: 2301420
Strand: Direct
Name: ydfG [H]
Synonym: Haur_1906
Alternate gene names: 159898430
Gene position: 2300878-2301420 (Clockwise)
Preceding gene: 159898429
Following gene: 159898431
Centisome position: 36.25
GC content: 48.25
Gene sequence:
>543_bases ATGCCCCGATTAAAACCACTTGCGCCTAACGAAGTTGATCCTGAATCGCTGAAAGTATTCGAGGGCTTTTTTGCCAAGCG CGGCAATGTGCCAAATATGTTTCGCACGTTTGCTCGCCGCCCTGAAATGATGATCGCCGCCAGCAATTTAATGAGTGCTG TATTGAGCACTGGTACGCTCGATTTACGCCTAAAAGAGATGGTGGTGGTACGCACATCGCAATTAAACGAATGCTCCTAT TGTTTAACCTCGCACTCGACGATTTTGCGCAACCTTGGGCTTTTGCAAGAAAATATTGATGCCTTGCAATCGCCCGATGA TCCACGTTGGACTGAGCGCGAACGGGTGGCTTTGCGCTATGCCGAACAAGTAACCTTGAATGCCAAAGGCATCAGCGATG AACTATGGTCGAGTTTGCGTGAGCATTTTGATGAAGGCGAAATTGTGGAATTAACCGCCACGACCAGCCTTTTTTCGATG TTTAATCGCTTCAACGATGCCTTGGATATGGCGATTACTGAGCCAGGTTGGCCGGAAGCATAA
Upstream 100 bases:
>100_bases CTAACGCAGCAACCCGCCTGTATGATTGTGCTTGCAATCGGGCGGGTTTGTTTATAATTTGGTGAGTTGTCCTTATTCAA ACTAGTGGAGGTTCATTGCA
Downstream 100 bases:
>100_bases TTGGCTTGGGTATTGAGGAATAATCATGCAAAAACCACGAATTGGCCTGATTGGCTTGGGCGCGATGGGTGCTCCGATGG CGTCGAATTTGCTCCAAGCA
Product: peroxidase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MPRLKPLAPNEVDPESLKVFEGFFAKRGNVPNMFRTFARRPEMMIAASNLMSAVLSTGTLDLRLKEMVVVRTSQLNECSY CLTSHSTILRNLGLLQENIDALQSPDDPRWTERERVALRYAEQVTLNAKGISDELWSSLREHFDEGEIVELTATTSLFSM FNRFNDALDMAITEPGWPEA
Sequences:
>Translated_180_residues MPRLKPLAPNEVDPESLKVFEGFFAKRGNVPNMFRTFARRPEMMIAASNLMSAVLSTGTLDLRLKEMVVVRTSQLNECSY CLTSHSTILRNLGLLQENIDALQSPDDPRWTERERVALRYAEQVTLNAKGISDELWSSLREHFDEGEIVELTATTSLFSM FNRFNDALDMAITEPGWPEA >Mature_179_residues PRLKPLAPNEVDPESLKVFEGFFAKRGNVPNMFRTFARRPEMMIAASNLMSAVLSTGTLDLRLKEMVVVRTSQLNECSYC LTSHSTILRNLGLLQENIDALQSPDDPRWTERERVALRYAEQVTLNAKGISDELWSSLREHFDEGEIVELTATTSLFSMF NRFNDALDMAITEPGWPEA
Specific function: Unknown
COG id: COG2128
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004675 - InterPro: IPR003779 [H]
Pfam domain/function: PF02627 CMD [H]
EC number: NA
Molecular weight: Translated: 20428; Mature: 20296
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRLKPLAPNEVDPESLKVFEGFFAKRGNVPNMFRTFARRPEMMIAASNLMSAVLSTGTL CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCH DLRLKEMVVVRTSQLNECSYCLTSHSTILRNLGLLQENIDALQSPDDPRWTERERVALRY HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH AEQVTLNAKGISDELWSSLREHFDEGEIVELTATTSLFSMFNRFNDALDMAITEPGWPEA HHHHEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure PRLKPLAPNEVDPESLKVFEGFFAKRGNVPNMFRTFARRPEMMIAASNLMSAVLSTGTL CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCH DLRLKEMVVVRTSQLNECSYCLTSHSTILRNLGLLQENIDALQSPDDPRWTERERVALRY HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH AEQVTLNAKGISDELWSSLREHFDEGEIVELTATTSLFSMFNRFNDALDMAITEPGWPEA HHHHEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]