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The map label for this gene is dppB [H]

Identifier: 159898422

GI number: 159898422

Start: 2290916

End: 2291902

Strand: Direct

Name: dppB [H]

Synonym: Haur_1898

Alternate gene names: 159898422

Gene position: 2290916-2291902 (Clockwise)

Preceding gene: 159898421

Following gene: 159898423

Centisome position: 36.1

GC content: 49.04

Gene sequence:

>987_bases
ATGCGCGTCAATTTTATCTTCTTCTTAATCAAACGCTTGGCGATGATGGCAGTTTCGCTGGTGGTGATTATTGCAATCTC
CTATACGCTGCTCGCCAAAGCCCCAGGCAATTTTATGGATGTCCAGCGAGCGGTGGCCGCAATGACCACGCTGGCCAATA
GCAACAGCGAGACCTTCAAAATTCAAAAGGCGCTCTTTGATGAACGCTATGGCCTCGATAAACCACTCTATATGCAAATT
TGGACTTACACCAAAAATGCTGTTACCTTCGATTTTGGCCCCTCGTTTCAAAGCCCAAGTATTTTGATTCAAGATATGGT
GCGCGAACGCTTGCCGCGCACGTTGTTGATCGTCTTCCTCGGGATTGGCCTCGCATTAATTGTGGGGATTCCGCTCGGGG
TAATTGCTGGTTTTCGCCGCAATACTTGGATTGACTATATCGTGACCGGCTTTTCGATGATCGGCCAAGTCGTGCCCGTG
TATGTTTTGGCAATTGTGCTGATTCTGATTTTTGCGGGGCAAGTTTGGAATGTGCTACCAAATGGTGGTTGGGCCACACC
CGTGCCAACCTTCAAGCAATTGATTTTGCCAGTGCTAACCTTGGCACTTGGGCCAATTGCTGGGATTGCCCGCTTTACCC
GCAACCAAGTTGCTGAAACCATGAGTCAAGAATTTATTCGTACTGCTCGCTCAAAAGGTATCTCCGAGCGCTTGGTGATT
ATGCGCCATGCCCTTCGTAACTCCTTGATTCCTGTGGTAACAACCACTGCGCCGCAAATTGCCTATGCGTTGGTTGGCTC
GGTGTGGATTGAAAATATTTTTCGGATTCCAGGGATTGGCCAATTGTTTGCCACCGCGCTGGGTGCACGCGATTACCCCT
TGGTAATCACCAGCACGGTTATTTTGGCCCTTGGGGTTATGTTGGCCAATTTATTAGCCGACATCCTGTATAGCATCCTT
GATCCGCGGATTAAGCTCGAAGCCTAA

Upstream 100 bases:

>100_bases
CACGCATTCTGACTGACATACGGCTGCACGCTTTGATCGCCGGCTCTGCCATGATGGAATGCACTGTTGATACTTGTCAT
TTAGTAATGGTAGGGTCGTT

Downstream 100 bases:

>100_bases
TTTGGTTGTTCCACGCTCTAGTCTCAAAGGAGAGCTTGTATCATGGCAGTTAATCAGCTTTCACAACCCACAGCCCAAGA
GGAGCTTCCGGTAGCGGAAT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MRVNFIFFLIKRLAMMAVSLVVIIAISYTLLAKAPGNFMDVQRAVAAMTTLANSNSETFKIQKALFDERYGLDKPLYMQI
WTYTKNAVTFDFGPSFQSPSILIQDMVRERLPRTLLIVFLGIGLALIVGIPLGVIAGFRRNTWIDYIVTGFSMIGQVVPV
YVLAIVLILIFAGQVWNVLPNGGWATPVPTFKQLILPVLTLALGPIAGIARFTRNQVAETMSQEFIRTARSKGISERLVI
MRHALRNSLIPVVTTTAPQIAYALVGSVWIENIFRIPGIGQLFATALGARDYPLVITSTVILALGVMLANLLADILYSIL
DPRIKLEA

Sequences:

>Translated_328_residues
MRVNFIFFLIKRLAMMAVSLVVIIAISYTLLAKAPGNFMDVQRAVAAMTTLANSNSETFKIQKALFDERYGLDKPLYMQI
WTYTKNAVTFDFGPSFQSPSILIQDMVRERLPRTLLIVFLGIGLALIVGIPLGVIAGFRRNTWIDYIVTGFSMIGQVVPV
YVLAIVLILIFAGQVWNVLPNGGWATPVPTFKQLILPVLTLALGPIAGIARFTRNQVAETMSQEFIRTARSKGISERLVI
MRHALRNSLIPVVTTTAPQIAYALVGSVWIENIFRIPGIGQLFATALGARDYPLVITSTVILALGVMLANLLADILYSIL
DPRIKLEA
>Mature_328_residues
MRVNFIFFLIKRLAMMAVSLVVIIAISYTLLAKAPGNFMDVQRAVAAMTTLANSNSETFKIQKALFDERYGLDKPLYMQI
WTYTKNAVTFDFGPSFQSPSILIQDMVRERLPRTLLIVFLGIGLALIVGIPLGVIAGFRRNTWIDYIVTGFSMIGQVVPV
YVLAIVLILIFAGQVWNVLPNGGWATPVPTFKQLILPVLTLALGPIAGIARFTRNQVAETMSQEFIRTARSKGISERLVI
MRHALRNSLIPVVTTTAPQIAYALVGSVWIENIFRIPGIGQLFATALGARDYPLVITSTVILALGVMLANLLADILYSIL
DPRIKLEA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=318, Percent_Identity=35.8490566037736, Blast_Score=197, Evalue=5e-52,
Organism=Escherichia coli, GI1787053, Length=322, Percent_Identity=32.2981366459627, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1789965, Length=345, Percent_Identity=28.9855072463768, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=28.1767955801105, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1789888, Length=257, Percent_Identity=32.6848249027237, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787761, Length=283, Percent_Identity=32.8621908127208, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787550, Length=270, Percent_Identity=28.1481481481481, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36199; Mature: 36199

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVNFIFFLIKRLAMMAVSLVVIIAISYTLLAKAPGNFMDVQRAVAAMTTLANSNSETFK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHH
IQKALFDERYGLDKPLYMQIWTYTKNAVTFDFGPSFQSPSILIQDMVRERLPRTLLIVFL
HHHHHHHHHCCCCCCHHHEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHH
GIGLALIVGIPLGVIAGFRRNTWIDYIVTGFSMIGQVVPVYVLAIVLILIFAGQVWNVLP
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NGGWATPVPTFKQLILPVLTLALGPIAGIARFTRNQVAETMSQEFIRTARSKGISERLVI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MRHALRNSLIPVVTTTAPQIAYALVGSVWIENIFRIPGIGQLFATALGARDYPLVITSTV
HHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHH
ILALGVMLANLLADILYSILDPRIKLEA
HHHHHHHHHHHHHHHHHHHHCCCEECCC
>Mature Secondary Structure
MRVNFIFFLIKRLAMMAVSLVVIIAISYTLLAKAPGNFMDVQRAVAAMTTLANSNSETFK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHH
IQKALFDERYGLDKPLYMQIWTYTKNAVTFDFGPSFQSPSILIQDMVRERLPRTLLIVFL
HHHHHHHHHCCCCCCHHHEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHH
GIGLALIVGIPLGVIAGFRRNTWIDYIVTGFSMIGQVVPVYVLAIVLILIFAGQVWNVLP
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NGGWATPVPTFKQLILPVLTLALGPIAGIARFTRNQVAETMSQEFIRTARSKGISERLVI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MRHALRNSLIPVVTTTAPQIAYALVGSVWIENIFRIPGIGQLFATALGARDYPLVITSTV
HHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHH
ILALGVMLANLLADILYSILDPRIKLEA
HHHHHHHHHHHHHHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]