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The map label for this gene is ydcR [C]

Identifier: 159898411

GI number: 159898411

Start: 2275514

End: 2276722

Strand: Reverse

Name: ydcR [C]

Synonym: Haur_1887

Alternate gene names: 159898411

Gene position: 2276722-2275514 (Counterclockwise)

Preceding gene: 159898412

Following gene: 159898410

Centisome position: 35.87

GC content: 49.55

Gene sequence:

>1209_bases
ATGGCTGCGATTGCAACAACTCCTAGCCAATTTGAACTCGCTGCTTGGGCTAAGACCATCACACCCTCGGCGCTGCAAGA
TATGCTTTCGGCAACTGCCAATCCTGAGGTTATTTCGTTTGCTCTGGGGCTACCCGCCCCAGAGCTGTTTCCTCGCCACC
AATTTAGCCAATTGGCCAGCACGTTACTCGAAGCCGAACCTTTGGCGTTGCAATATGGCCCGCCAAGTACCACCCTCAAA
ACGGCAATTGTTTCATTGATGGCGCAACGAGGGGTACGCTGTCGGCCCGAGCAAATCTTTCTGACCAATGGTGCGCAACA
GGGCATGAACCTGTTGGTACGCTTGCTTTTGGCCGATGGCGGCAGCGTTTTGTTGGAAGATTGTATTTATACGGGCTTTC
AGCAAGTGCTTGATCCATTTCAAGCTAAGTTGCTAACCGTGCCAACCAACCCTGAAACTGGTATGGATGTAGCAGCAGTC
GAAGCTCATTTAGCTGCAGGCCAACGCCCAAGCTTAATCTATGCGATCAGCGATGGACACAACCCGCTTGGCGTGAGCAT
GAGCCTCGCCCAACGCCAGCAGCTCGTTGAACTAGCCCAACAGTATCAAATTCCCATTATTGAAGATGATGCTTATGGCT
TTTTAAGCTATCAGGCTGATACGATTGCCCCAATGCGAGCCTTAAGTGACGACTGGGTTTTATATATTGGCTCATTTTCG
AAAATTCTAGCCCCATCGTTGCGGGTTGGTTGGTTAGTCGTACCCGAGTGGTTAATCGAACGCTTGTCGATCGTCAAAGA
GGCGAGCGATATTGGTACAGCCACGCTGAGCCAACGTTTAGTCGCAGCCTATACCCAAACCCATCAATTAACTACGCATA
TCGACCAATTATGTCAAATATATACAACTCGCCGCGATACAATGTTTAGCGCGTTGGAGCAGCATTTTCCGTCCCAAACC
CGTTGGTATCAGCCTAGCCATGGCATGTTTATTTGGGTTGAACTGCCTACAACAGTTGATCCCTTTAAACTCCTAGACCG
AGCGATCAACCAAGCGAAGGTGGCGTTTATCCCAGGCAGTGTGTTTGGTGTGGCGGGCAAATCGATGAGTACCAATGGAA
TTCGCCTGAATTTTTCGAATGCCGATATTGACCAGATTAATGCGGGAATTGAGCGTTTAGCCACAATCATGCAAACCCTC
AAAGCCTGA

Upstream 100 bases:

>100_bases
AAATTATTCAGCGCAAAAATGCCATTGGCTTCGGCAGTGGCAACATCAAAGCACTCTTTGCCGCCGTCGAACGCGAGCAA
GCTTTGCGGGGAAATCTCTA

Downstream 100 bases:

>100_bases
GGATGTCCCAAATCTAACCCGAAAGGATCGTTGTGCGAGTTCTATTCACCACCAATCCTGGGGTTGGTCATCTCAACCCA
ATGTTGCCGTTGGCGCATGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MAAIATTPSQFELAAWAKTITPSALQDMLSATANPEVISFALGLPAPELFPRHQFSQLASTLLEAEPLALQYGPPSTTLK
TAIVSLMAQRGVRCRPEQIFLTNGAQQGMNLLVRLLLADGGSVLLEDCIYTGFQQVLDPFQAKLLTVPTNPETGMDVAAV
EAHLAAGQRPSLIYAISDGHNPLGVSMSLAQRQQLVELAQQYQIPIIEDDAYGFLSYQADTIAPMRALSDDWVLYIGSFS
KILAPSLRVGWLVVPEWLIERLSIVKEASDIGTATLSQRLVAAYTQTHQLTTHIDQLCQIYTTRRDTMFSALEQHFPSQT
RWYQPSHGMFIWVELPTTVDPFKLLDRAINQAKVAFIPGSVFGVAGKSMSTNGIRLNFSNADIDQINAGIERLATIMQTL
KA

Sequences:

>Translated_402_residues
MAAIATTPSQFELAAWAKTITPSALQDMLSATANPEVISFALGLPAPELFPRHQFSQLASTLLEAEPLALQYGPPSTTLK
TAIVSLMAQRGVRCRPEQIFLTNGAQQGMNLLVRLLLADGGSVLLEDCIYTGFQQVLDPFQAKLLTVPTNPETGMDVAAV
EAHLAAGQRPSLIYAISDGHNPLGVSMSLAQRQQLVELAQQYQIPIIEDDAYGFLSYQADTIAPMRALSDDWVLYIGSFS
KILAPSLRVGWLVVPEWLIERLSIVKEASDIGTATLSQRLVAAYTQTHQLTTHIDQLCQIYTTRRDTMFSALEQHFPSQT
RWYQPSHGMFIWVELPTTVDPFKLLDRAINQAKVAFIPGSVFGVAGKSMSTNGIRLNFSNADIDQINAGIERLATIMQTL
KA
>Mature_401_residues
AAIATTPSQFELAAWAKTITPSALQDMLSATANPEVISFALGLPAPELFPRHQFSQLASTLLEAEPLALQYGPPSTTLKT
AIVSLMAQRGVRCRPEQIFLTNGAQQGMNLLVRLLLADGGSVLLEDCIYTGFQQVLDPFQAKLLTVPTNPETGMDVAAVE
AHLAAGQRPSLIYAISDGHNPLGVSMSLAQRQQLVELAQQYQIPIIEDDAYGFLSYQADTIAPMRALSDDWVLYIGSFSK
ILAPSLRVGWLVVPEWLIERLSIVKEASDIGTATLSQRLVAAYTQTHQLTTHIDQLCQIYTTRRDTMFSALEQHFPSQTR
WYQPSHGMFIWVELPTTVDPFKLLDRAINQAKVAFIPGSVFGVAGKSMSTNGIRLNFSNADIDQINAGIERLATIMQTLK
A

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=418, Percent_Identity=26.0765550239234, Blast_Score=153, Evalue=3e-37,
Organism=Homo sapiens, GI33469970, Length=418, Percent_Identity=26.0765550239234, Blast_Score=153, Evalue=3e-37,
Organism=Escherichia coli, GI1787710, Length=346, Percent_Identity=29.7687861271676, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1790797, Length=386, Percent_Identity=29.7927461139896, Blast_Score=139, Evalue=4e-34,
Organism=Saccharomyces cerevisiae, GI6321000, Length=437, Percent_Identity=24.0274599542334, Blast_Score=86, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6321236, Length=285, Percent_Identity=24.5614035087719, Blast_Score=76, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6321929, Length=370, Percent_Identity=21.8918918918919, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21356535, Length=397, Percent_Identity=25.1889168765743, Blast_Score=118, Evalue=6e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 44060; Mature: 43929

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAIATTPSQFELAAWAKTITPSALQDMLSATANPEVISFALGLPAPELFPRHQFSQLAS
CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCHHHCCHHHHHHHHH
TLLEAEPLALQYGPPSTTLKTAIVSLMAQRGVRCRPEQIFLTNGAQQGMNLLVRLLLADG
HHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
GSVLLEDCIYTGFQQVLDPFQAKLLTVPTNPETGMDVAAVEAHLAAGQRPSLIYAISDGH
CHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCC
NPLGVSMSLAQRQQLVELAQQYQIPIIEDDAYGFLSYQADTIAPMRALSDDWVLYIGSFS
CCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHHHHHHHHCCCCEEEEECCHH
KILAPSLRVGWLVVPEWLIERLSIVKEASDIGTATLSQRLVAAYTQTHQLTTHIDQLCQI
HHHCCCHHCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTTRRDTMFSALEQHFPSQTRWYQPSHGMFIWVELPTTVDPFKLLDRAINQAKVAFIPGS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCH
VFGVAGKSMSTNGIRLNFSNADIDQINAGIERLATIMQTLKA
HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AAIATTPSQFELAAWAKTITPSALQDMLSATANPEVISFALGLPAPELFPRHQFSQLAS
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCCCHHHCCHHHHHHHHH
TLLEAEPLALQYGPPSTTLKTAIVSLMAQRGVRCRPEQIFLTNGAQQGMNLLVRLLLADG
HHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
GSVLLEDCIYTGFQQVLDPFQAKLLTVPTNPETGMDVAAVEAHLAAGQRPSLIYAISDGH
CHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCC
NPLGVSMSLAQRQQLVELAQQYQIPIIEDDAYGFLSYQADTIAPMRALSDDWVLYIGSFS
CCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHHHHHHHHCCCCEEEEECCHH
KILAPSLRVGWLVVPEWLIERLSIVKEASDIGTATLSQRLVAAYTQTHQLTTHIDQLCQI
HHHCCCHHCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTTRRDTMFSALEQHFPSQTRWYQPSHGMFIWVELPTTVDPFKLLDRAINQAKVAFIPGS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCH
VFGVAGKSMSTNGIRLNFSNADIDQINAGIERLATIMQTLKA
HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]