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The map label for this gene is yfmD [H]

Identifier: 159898331

GI number: 159898331

Start: 2100393

End: 2101403

Strand: Direct

Name: yfmD [H]

Synonym: Haur_1807

Alternate gene names: 159898331

Gene position: 2100393-2101403 (Clockwise)

Preceding gene: 159898330

Following gene: 159898332

Centisome position: 33.09

GC content: 55.49

Gene sequence:

>1011_bases
ATGGCTACAACTTTGCTCTCGCGACGCATGCTGATTGGAGTGCTGGCAGCCTTTGGCTTGCTGGCAATTGTTATTTTATT
GAGCCTTGGGGTTGGCTCGGATAATGCAATTGGCTTGGCCCAAGTCTTTGCTGTGCTCCAAGGCGCTGGTGATGATCAAG
CCCGTTTGACCGTGCTCGATTTGCGCGTACCACGCACGATTATTGGCGTTTTGGTCGGCGTGGCGCTTGGCTCGGCTGGT
GCATTATTGCAGGCGGCTGCCCGTAATCCTTTGGCTGAACCAGGTTTGTTGGGAGTAAGCGCAGGCTCGGCAACAGCTGT
GGTCGTATCGATTGCGCTTGGAGCCAGCTTGAATAATTTACAAGTTGGCGTTGCCATTTTTGGGGCGTTGATTGGCTGTA
GCGTCGCGCTCGGCGTTGCCCGCATGAGTGGCCTCGGTGATGATCCAATTCGCTTAGTGCTGGCGGGAGCAGCCTTGAGC
AGCATGCTGGCGGCGGTTTCCTCAGTAATTCTGTTGACCGATCAACGCACCGCTGATGAAGTGCGCTTTTGGACGATTGG
CGCAATTGCTGGCCGTAATTTAAGCAGCATCACTTCGGCAATTCCCGTATTATTGCTGGGTTTGGCGGTTGCCTTGCTGC
TAGCACGGCCATTAGCGGCCTTGGCACTGGGCGAAAAAGTTGCCAGTGGGCTGGGTCAACGTCCCAAATTAGTCCGAACA
GGCGTGATGATCAGCGTCGCCTTATTGGTTGGTTCGGCCACGGCGATGGCTGGGCCGATTGGCTTTGTTGGGCTAGTGGT
GCCGATTGCGGCTCGTGCGATGGTTGGGCCAGATATTCGGCGAGCGTTAATATTGGCGGTGCTGCTTGGCCCAAGTTTTG
TGCTGTTGGCCGATGTGCTTTCGCGGATTGTTGCGCGACCAACCGAAACCCCGCTGGGTGTGATTTCAGCATTAATTGGT
GCGCCAATTTTGGTGCTGATTGTGCGCAGCCAACGCTTACCAGCGCTCTAG

Upstream 100 bases:

>100_bases
GCCCCTCGCCCGCCGCAGTGGAGAGGGGTTGGGGTGAGGGGATATGTTCTATGCTCTATGTTCTTCTTGCCCCAATTAAA
ACATTCTTGGGAAATGTATT

Downstream 100 bases:

>100_bases
GAGAATGGCATGGATCGACTTTCGCTGAACCCAACCACGAGTGCTGCTCACGAGCTAAACCTAGCTCAGCCATTTACAGG
CCAACCAACTGGCTTGTGGT

Product: transport system permease

Products: ADP; phosphate; ferric enterobactin [Cytoplasm] [C]

Alternate protein names: Ferric-citrate import system permease protein [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MATTLLSRRMLIGVLAAFGLLAIVILLSLGVGSDNAIGLAQVFAVLQGAGDDQARLTVLDLRVPRTIIGVLVGVALGSAG
ALLQAAARNPLAEPGLLGVSAGSATAVVVSIALGASLNNLQVGVAIFGALIGCSVALGVARMSGLGDDPIRLVLAGAALS
SMLAAVSSVILLTDQRTADEVRFWTIGAIAGRNLSSITSAIPVLLLGLAVALLLARPLAALALGEKVASGLGQRPKLVRT
GVMISVALLVGSATAMAGPIGFVGLVVPIAARAMVGPDIRRALILAVLLGPSFVLLADVLSRIVARPTETPLGVISALIG
APILVLIVRSQRLPAL

Sequences:

>Translated_336_residues
MATTLLSRRMLIGVLAAFGLLAIVILLSLGVGSDNAIGLAQVFAVLQGAGDDQARLTVLDLRVPRTIIGVLVGVALGSAG
ALLQAAARNPLAEPGLLGVSAGSATAVVVSIALGASLNNLQVGVAIFGALIGCSVALGVARMSGLGDDPIRLVLAGAALS
SMLAAVSSVILLTDQRTADEVRFWTIGAIAGRNLSSITSAIPVLLLGLAVALLLARPLAALALGEKVASGLGQRPKLVRT
GVMISVALLVGSATAMAGPIGFVGLVVPIAARAMVGPDIRRALILAVLLGPSFVLLADVLSRIVARPTETPLGVISALIG
APILVLIVRSQRLPAL
>Mature_335_residues
ATTLLSRRMLIGVLAAFGLLAIVILLSLGVGSDNAIGLAQVFAVLQGAGDDQARLTVLDLRVPRTIIGVLVGVALGSAGA
LLQAAARNPLAEPGLLGVSAGSATAVVVSIALGASLNNLQVGVAIFGALIGCSVALGVARMSGLGDDPIRLVLAGAALSS
MLAAVSSVILLTDQRTADEVRFWTIGAIAGRNLSSITSAIPVLLLGLAVALLLARPLAALALGEKVASGLGQRPKLVRTG
VMISVALLVGSATAMAGPIGFVGLVVPIAARAMVGPDIRRALILAVLLGPSFVLLADVLSRIVARPTETPLGVISALIGA
PILVLIVRSQRLPAL

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Involved in the translocation of the substrate across the membrane (Probable) [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786805, Length=276, Percent_Identity=43.4782608695652, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1790740, Length=284, Percent_Identity=33.8028169014084, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1790741, Length=323, Percent_Identity=34.6749226006192, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788004, Length=282, Percent_Identity=36.5248226950355, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786804, Length=296, Percent_Identity=32.0945945945946, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1786347, Length=287, Percent_Identity=29.9651567944251, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 33600; Mature: 33469

Theoretical pI: Translated: 12.01; Mature: 12.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTLLSRRMLIGVLAAFGLLAIVILLSLGVGSDNAIGLAQVFAVLQGAGDDQARLTVLD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE
LRVPRTIIGVLVGVALGSAGALLQAAARNPLAEPGLLGVSAGSATAVVVSIALGASLNNL
CHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCH
QVGVAIFGALIGCSVALGVARMSGLGDDPIRLVLAGAALSSMLAAVSSVILLTDQRTADE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHH
VRFWTIGAIAGRNLSSITSAIPVLLLGLAVALLLARPLAALALGEKVASGLGQRPKLVRT
HHEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GVMISVALLVGSATAMAGPIGFVGLVVPIAARAMVGPDIRRALILAVLLGPSFVLLADVL
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHH
SRIVARPTETPLGVISALIGAPILVLIVRSQRLPAL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ATTLLSRRMLIGVLAAFGLLAIVILLSLGVGSDNAIGLAQVFAVLQGAGDDQARLTVLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE
LRVPRTIIGVLVGVALGSAGALLQAAARNPLAEPGLLGVSAGSATAVVVSIALGASLNNL
CHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCH
QVGVAIFGALIGCSVALGVARMSGLGDDPIRLVLAGAALSSMLAAVSSVILLTDQRTADE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHH
VRFWTIGAIAGRNLSSITSAIPVLLLGLAVALLLARPLAALALGEKVASGLGQRPKLVRT
HHEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GVMISVALLVGSATAMAGPIGFVGLVVPIAARAMVGPDIRRALILAVLLGPSFVLLADVL
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHH
SRIVARPTETPLGVISALIGAPILVLIVRSQRLPAL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ferric enterobactin [Periplasm]; H2O [C]

Specific reaction: ATP + ferric enterobactin [Periplasm] + H2O = ADP + phosphate + ferric enterobactin [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]