| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is yfiZ [H]
Identifier: 159898259
GI number: 159898259
Start: 2021167
End: 2022210
Strand: Direct
Name: yfiZ [H]
Synonym: Haur_1735
Alternate gene names: 159898259
Gene position: 2021167-2022210 (Clockwise)
Preceding gene: 159898255
Following gene: 159898260
Centisome position: 31.85
GC content: 55.84
Gene sequence:
>1044_bases GTGGCGGTTACCATTGCCCAACCAGCATCACAGCCCAAACCAAAACGTCGCGCCGCTGCGGCTTTAGCAATTGGCCTGCT TGTAGCATTCGGCCTCTTGCTGGTGATTATGACCCTGAGTATTAATTTTGGGGCAGCCGATGTTGCTCCCAGCACGGTCT GGGCCTCGTTATTTGATTATGACCCCAGCTCAACCCAACACCTGATTATTCGCACCTTGCGCATGCCACGGGTTTTGGTG GCAGCAATTGTCGGGGCAATTTTGGCCTTGGCCGGGGCGATTATGCAGGGCTTGACCCGCAACCCACTGGCCGATGCAGG CTTGTTGGGCATCGAAAGCGGCGCAGCCTTGGGCGTGGTCTTAGCAATCACCTTCTTCGATATCAAAACCCTCAATTTGT ATTCGATTTTTGCCTTTGCTGGTGCAGCCGTAACAGCGGTGCTGGTGTATAGCCTTGGCTCTTTGGGGCGCGGCGGGCCA ACGCCACTCAAATTGACTTTGGCTGGCGCGATGATCACGGCTTTCTGTTCCTCGTTTACCAGCGCCATCCTGATTCTCGA CCAACAAACGCTTGATGAAGTGCGGCTTTGGTTGGCTGGCACGGTGGCGGGTCGCGATTTAGGCTTAATCGGCCAAAGCC TGCCCTACGTTGTGGTTGGCATGATATTAGCCTTGAGCCTTGGCCGTTCGCTGACCGCAATGTCATTGGGCGAGGATGTG GCTCGTGGCTTAGGCCAACGCACTGGCTGGGTCAAAACTATTGCGGCAATTGCCGTAATTTTGTTGGCTGGCAGTGCGGT GGCGTTGGCTGGGCCGATTGGCTTTTTGGGCTTGTTGGTTCCACACATTATGCGCTTTATCGTCGGCCTCGATTATCGCT GGCTCTTGCCCTATTGCGCAATTGGCGGCGCGTTACTGCTCGTGGTGGCCGACATCATTGGGCGGGTGATTGTGCGCCCG ATGGAAGTTCCGGTTGGTGTAGTAACCGCGCTACTCGGCGGCCCAATGTTTATCTACCTTGTACGCTGGCGGGTGCAACG ATGA
Upstream 100 bases:
>100_bases TACTCAAACCGTTTAAGCAATAGGCAATTTTCCGAGCCAAGCAGCACGGCGTTGGTCGTTTTATTGCGCTTAAAAACGGT TGATCGACGGAGTTACTAAC
Downstream 100 bases:
>100_bases ACACTTTTCCATGGATTACGATTCGCCCTAAGTTTGGCAAGTTTTCGCTGCGAATCGACCGCCGTTTGCCCAAGGTTGCG CTGATTATCGCGCTGCTGGT
Product: transport system permease
Products: ADP; phosphate; ferric enterobactin [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 347; Mature: 346
Protein sequence:
>347_residues MAVTIAQPASQPKPKRRAAAALAIGLLVAFGLLLVIMTLSINFGAADVAPSTVWASLFDYDPSSTQHLIIRTLRMPRVLV AAIVGAILALAGAIMQGLTRNPLADAGLLGIESGAALGVVLAITFFDIKTLNLYSIFAFAGAAVTAVLVYSLGSLGRGGP TPLKLTLAGAMITAFCSSFTSAILILDQQTLDEVRLWLAGTVAGRDLGLIGQSLPYVVVGMILALSLGRSLTAMSLGEDV ARGLGQRTGWVKTIAAIAVILLAGSAVALAGPIGFLGLLVPHIMRFIVGLDYRWLLPYCAIGGALLLVVADIIGRVIVRP MEVPVGVVTALLGGPMFIYLVRWRVQR
Sequences:
>Translated_347_residues MAVTIAQPASQPKPKRRAAAALAIGLLVAFGLLLVIMTLSINFGAADVAPSTVWASLFDYDPSSTQHLIIRTLRMPRVLV AAIVGAILALAGAIMQGLTRNPLADAGLLGIESGAALGVVLAITFFDIKTLNLYSIFAFAGAAVTAVLVYSLGSLGRGGP TPLKLTLAGAMITAFCSSFTSAILILDQQTLDEVRLWLAGTVAGRDLGLIGQSLPYVVVGMILALSLGRSLTAMSLGEDV ARGLGQRTGWVKTIAAIAVILLAGSAVALAGPIGFLGLLVPHIMRFIVGLDYRWLLPYCAIGGALLLVVADIIGRVIVRP MEVPVGVVTALLGGPMFIYLVRWRVQR >Mature_346_residues AVTIAQPASQPKPKRRAAAALAIGLLVAFGLLLVIMTLSINFGAADVAPSTVWASLFDYDPSSTQHLIIRTLRMPRVLVA AIVGAILALAGAIMQGLTRNPLADAGLLGIESGAALGVVLAITFFDIKTLNLYSIFAFAGAAVTAVLVYSLGSLGRGGPT PLKLTLAGAMITAFCSSFTSAILILDQQTLDEVRLWLAGTVAGRDLGLIGQSLPYVVVGMILALSLGRSLTAMSLGEDVA RGLGQRTGWVKTIAAIAVILLAGSAVALAGPIGFLGLLVPHIMRFIVGLDYRWLLPYCAIGGALLLVVADIIGRVIVRPM EVPVGVVTALLGGPMFIYLVRWRVQR
Specific function: Part of the ABC transporter complex yfiYZ/yfhA/yusV involved in import of the iron-hydroxamate siderophores schizokinen, arthrobactin and corprogen (Probable) [H]
COG id: COG0609
COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786805, Length=297, Percent_Identity=41.7508417508418, Blast_Score=191, Evalue=5e-50, Organism=Escherichia coli, GI1790740, Length=307, Percent_Identity=36.8078175895765, Blast_Score=163, Evalue=1e-41, Organism=Escherichia coli, GI1790741, Length=310, Percent_Identity=38.0645161290323, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1788004, Length=277, Percent_Identity=36.101083032491, Blast_Score=125, Evalue=5e-30, Organism=Escherichia coli, GI1786347, Length=320, Percent_Identity=31.875, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1786804, Length=299, Percent_Identity=35.1170568561873, Blast_Score=110, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000522 [H]
Pfam domain/function: PF01032 FecCD [H]
EC number: NA
Molecular weight: Translated: 36162; Mature: 36031
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVTIAQPASQPKPKRRAAAALAIGLLVAFGLLLVIMTLSINFGAADVAPSTVWASLFDY CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC DPSSTQHLIIRTLRMPRVLVAAIVGAILALAGAIMQGLTRNPLADAGLLGIESGAALGVV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH LAITFFDIKTLNLYSIFAFAGAAVTAVLVYSLGSLGRGGPTPLKLTLAGAMITAFCSSFT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHH SAILILDQQTLDEVRLWLAGTVAGRDLGLIGQSLPYVVVGMILALSLGRSLTAMSLGEDV HHHHEECHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH ARGLGQRTGWVKTIAAIAVILLAGSAVALAGPIGFLGLLVPHIMRFIVGLDYRWLLPYCA HHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IGGALLLVVADIIGRVIVRPMEVPVGVVTALLGGPMFIYLVRWRVQR HHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHCCHHHHHHHHHHHCC >Mature Secondary Structure AVTIAQPASQPKPKRRAAAALAIGLLVAFGLLLVIMTLSINFGAADVAPSTVWASLFDY EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC DPSSTQHLIIRTLRMPRVLVAAIVGAILALAGAIMQGLTRNPLADAGLLGIESGAALGVV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH LAITFFDIKTLNLYSIFAFAGAAVTAVLVYSLGSLGRGGPTPLKLTLAGAMITAFCSSFT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHH SAILILDQQTLDEVRLWLAGTVAGRDLGLIGQSLPYVVVGMILALSLGRSLTAMSLGEDV HHHHEECHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH ARGLGQRTGWVKTIAAIAVILLAGSAVALAGPIGFLGLLVPHIMRFIVGLDYRWLLPYCA HHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IGGALLLVVADIIGRVIVRPMEVPVGVVTALLGGPMFIYLVRWRVQR HHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; ferric enterobactin [Periplasm]; H2O [C]
Specific reaction: ATP + ferric enterobactin [Periplasm] + H2O = ADP + phosphate + ferric enterobactin [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]