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The map label for this gene is algU [H]

Identifier: 159898168

GI number: 159898168

Start: 1901574

End: 1902242

Strand: Direct

Name: algU [H]

Synonym: Haur_1644

Alternate gene names: 159898168

Gene position: 1901574-1902242 (Clockwise)

Preceding gene: 159898159

Following gene: 159898169

Centisome position: 29.96

GC content: 52.17

Gene sequence:

>669_bases
ATGCAAAAGCCATGGGAAATTGATGCCACCTACTATCAAGAGGAATCAGAGTTGATTCAGGCCTTGCGGCGGCGTGAGCG
CATGGCTTGTACTTGCCTGCTAAAACGCTATGCTTCACGTTTGTATCATGTGGCCCTCCGCATGGTCGGTGATGCCGATG
AAGCCGAAGATGTAATTCAAGAGAGCTTTATTGAAGCCTGTCGTAAAATCGAGCAATATCGTGGTGATGGTGCCTTGGGC
GCGTGGCTCCAACGAATTGTAGTCAATGCCTGTTTTATGCGGTTGCGGCGTAAGCGAGCACAAACCGTGCCAATCGACGA
GCAGTTTGATTTGGAGAGTGCCAGCCCACGGCCTGAATTATGGGTTTTGGATCGCGAGTTGAGTGCTGAATTACGCAGCG
CGATCGAGCAATTGCCCGAAAGCTTGCGGACGGCCTTGATTGCCCGTGATATTGAGCATTACAGCACCGAGGAAGCCGCC
AATTTATTGCAGATAACACCCTCGGCATTGAAAGTGCGGTTACATCGAGCGCGTGCGGCCTTGCGCGACATTTTGGCTCA
AGGCAGCGAAACGGCTGAGCCAGCGATCGATCATCTGACTGATCAGATGTTGGAAACACTATGCACCGCTGAACCTAGCC
CGTCAATAGCCCGCCAGTCATCGAAATAG

Upstream 100 bases:

>100_bases
TTGGAAAAACATAGACAACCCTCCATTTTGCTGTTACATATTCTTGATGCGTTTGCTTGTACAATGGTTACATGGATTGG
TTTGCAGTTAAGGAATTGCG

Downstream 100 bases:

>100_bases
CCCGATACGATCCCTCACCCCCAACCCCTCTCCCACTGCGGCAGGAGAGGGAAGAACCACGGCTGATTCCCCCTCTCCCG
CGTGTGGGATGAAGGGGCTA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQKPWEIDATYYQEESELIQALRRRERMACTCLLKRYASRLYHVALRMVGDADEAEDVIQESFIEACRKIEQYRGDGALG
AWLQRIVVNACFMRLRRKRAQTVPIDEQFDLESASPRPELWVLDRELSAELRSAIEQLPESLRTALIARDIEHYSTEEAA
NLLQITPSALKVRLHRARAALRDILAQGSETAEPAIDHLTDQMLETLCTAEPSPSIARQSSK

Sequences:

>Translated_222_residues
MQKPWEIDATYYQEESELIQALRRRERMACTCLLKRYASRLYHVALRMVGDADEAEDVIQESFIEACRKIEQYRGDGALG
AWLQRIVVNACFMRLRRKRAQTVPIDEQFDLESASPRPELWVLDRELSAELRSAIEQLPESLRTALIARDIEHYSTEEAA
NLLQITPSALKVRLHRARAALRDILAQGSETAEPAIDHLTDQMLETLCTAEPSPSIARQSSK
>Mature_222_residues
MQKPWEIDATYYQEESELIQALRRRERMACTCLLKRYASRLYHVALRMVGDADEAEDVIQESFIEACRKIEQYRGDGALG
AWLQRIVVNACFMRLRRKRAQTVPIDEQFDLESASPRPELWVLDRELSAELRSAIEQLPESLRTALIARDIEHYSTEEAA
NLLQITPSALKVRLHRARAALRDILAQGSETAEPAIDHLTDQMLETLCTAEPSPSIARQSSK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=173, Percent_Identity=32.3699421965318, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 25395; Mature: 25395

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKPWEIDATYYQEESELIQALRRRERMACTCLLKRYASRLYHVALRMVGDADEAEDVIQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ESFIEACRKIEQYRGDGALGAWLQRIVVNACFMRLRRKRAQTVPIDEQFDLESASPRPEL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
WVLDRELSAELRSAIEQLPESLRTALIARDIEHYSTEEAANLLQITPSALKVRLHRARAA
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LRDILAQGSETAEPAIDHLTDQMLETLCTAEPSPSIARQSSK
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
>Mature Secondary Structure
MQKPWEIDATYYQEESELIQALRRRERMACTCLLKRYASRLYHVALRMVGDADEAEDVIQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ESFIEACRKIEQYRGDGALGAWLQRIVVNACFMRLRRKRAQTVPIDEQFDLESASPRPEL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
WVLDRELSAELRSAIEQLPESLRTALIARDIEHYSTEEAANLLQITPSALKVRLHRARAA
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LRDILAQGSETAEPAIDHLTDQMLETLCTAEPSPSIARQSSK
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]